View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19553_high_2 (Length: 343)
Name: NF19553_high_2
Description: NF19553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19553_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 306; Significance: 1e-172; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 18 - 327
Target Start/End: Original strand, 1451537 - 1451846
Alignment:
| Q |
18 |
ggaactggagctatgtactctgtgagtatcattcctatgacgacaaaagcaagagatcaaacggtctcagagatttataatagttcattggctgaacgta |
117 |
Q |
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| T |
1451537 |
ggaactggagctatgtactctgtgagtatcattcctatgacgacaaaagcaagagatcaaacggtctcagagatttataatagttcattggctgaacgta |
1451636 |
T |
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| Q |
118 |
tgaaagcgattgtcaaagagtttataagaattggagccacgtaccgcaagaaattccttgattgagcaacaagaaacgcaaatgaaagaacattctgaat |
217 |
Q |
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| T |
1451637 |
tgaaagcgattgtcaaagagtttataagaattggagccacataccgcaagaaattccttgattgagcaacaagaaacgcaaatgaaagaacattctgaat |
1451736 |
T |
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| Q |
218 |
ttaggtccaccctaacaggcaaagaacaatgtcaaaacttcaacaattgcttctgtgtgtttcatactccgatcctttcctttgactgcttagtagaaag |
317 |
Q |
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| T |
1451737 |
ttaggtccaccctaacaggcaaagaacaatgtcaaaacttcaacaattgcttctgtgtgtttcatactccgatcctttcctttgactgcttagtagaaag |
1451836 |
T |
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| Q |
318 |
ctttaattta |
327 |
Q |
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| T |
1451837 |
ctttaattta |
1451846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 92 - 153
Target Start/End: Original strand, 1006667 - 1006728
Alignment:
| Q |
92 |
ttataatagttcattggctgaacgtatgaaagcgattgtcaaagagtttataagaattggag |
153 |
Q |
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| T |
1006667 |
ttataatacttcattggctgaacgtatgaaagcacttgtaaaagagtttacaagaattggag |
1006728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 92 - 154
Target Start/End: Original strand, 52474808 - 52474870
Alignment:
| Q |
92 |
ttataatagttcattggctgaacgtatgaaagcgattgtcaaagagtttataagaattggagc |
154 |
Q |
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| T |
52474808 |
ttataatagtttattggctgaacgtttgcaagcgcttgtcaaagagtttataagatttggagc |
52474870 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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