View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19553_high_3 (Length: 270)
Name: NF19553_high_3
Description: NF19553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19553_high_3 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 233; Significance: 1e-129; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 18 - 270
Target Start/End: Complemental strand, 1624522 - 1624270
Alignment:
| Q |
18 |
aatcaaaatatctggattcgtcacttgcagaaacagaagaagggtcatttccaaattggttttctgtgcatgaaaggaagcttttgcagtctaagtctcc |
117 |
Q |
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| T |
1624522 |
aatcaaaatttctggatccgtcacttgcagaaacagaagaagggtcatttccaaattggttttctgtgcatgaaaggaagcttttgcagtcaaagggtcc |
1624423 |
T |
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| Q |
118 |
agtaaagtacaatcttgtggtggcaaaagatggttctggtcagtacaagactgtgcaagctgctttaaatgctgctgctaagagaaaatataagacaagg |
217 |
Q |
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| T |
1624422 |
agtaaagtacaatcttgtggtggcaaaagatggttctggtcagtacaagactgtgcaagctgctttaaatgctgctgctaagagaaaatataagacaagg |
1624323 |
T |
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| Q |
218 |
tttgtgatacatgttaagaaaggtgtttatagagagaacattgaggttgctgt |
270 |
Q |
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| T |
1624322 |
tttgtgatacatgttaagaaaggtgtttatagagagaacattgaggttgctgt |
1624270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 30 - 270
Target Start/End: Complemental strand, 1630485 - 1630245
Alignment:
| Q |
30 |
tggattcgtcacttgcagaaacagaagaagggtcatttccaaattggttttctgtgcatgaaaggaagcttttgcagtctaagtctccagtaaagtacaa |
129 |
Q |
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| T |
1630485 |
tggattcgtcacttgcagaaacagaagaagggtcattttcaaattggttttctgtgcatgaaaggaagcttttgcagtctaagtctccagtaaagtacaa |
1630386 |
T |
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| Q |
130 |
tcttgtggtggcaaaagatggttctggtcagtacaagactgtgcaagctgctttaaatgctgctgctaagagaaaatataagacaaggtttgtgatacat |
229 |
Q |
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| T |
1630385 |
tcttgtggtggcaaaagatggttctggacagtacaagactgtgcaagctgctttaaatgctgctgctaagagaaaatataagacaaggtttgtgatacat |
1630286 |
T |
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| Q |
230 |
gttaagaaaggtgtttatagagagaacattgaggttgctgt |
270 |
Q |
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| T |
1630285 |
gttaagaaaggtgtttatagagagaacattgaggttgctgt |
1630245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 18 - 270
Target Start/End: Complemental strand, 1607501 - 1607249
Alignment:
| Q |
18 |
aatcaaaatatctggattcgtcacttgcagaaacagaagaagggtcatttccaaattggttttctgtgcatgaaaggaagcttttgcagtctaagtctcc |
117 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |
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| T |
1607501 |
aatcaaaatttctggattcgtcacttgcagaaacagaagaagggtcatttccaaattggttttctgtgcatgaaaggaagcttttgcagtcaaagggtcc |
1607402 |
T |
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| Q |
118 |
agtaaagtacaatcttgtggtggcaaaagatggttctggtcagtacaagactgtgcaagctgctttaaatgctgctgctaagagaaaatataagacaagg |
217 |
Q |
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| T |
1607401 |
agtaaagtacaatcttgtggtggcaaaagatggttctggacagtacaagactgtgcaggctgctttaaatgctgctgctaagagaaaatataagacaagg |
1607302 |
T |
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| Q |
218 |
tttgtgatacatgttaagaaaggtgtttatagagagaacattgaggttgctgt |
270 |
Q |
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| T |
1607301 |
tttgtgatacatgttaagaaaggtgtttatagagagaacattgaggttgctgt |
1607249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 45 - 270
Target Start/End: Original strand, 10819809 - 10820034
Alignment:
| Q |
45 |
cagaaacagaagaagggtcatttccaaattggttttctgtgcatgaaaggaagcttttgcagtctaagtctccagtaaagtacaatcttgtggtggcaaa |
144 |
Q |
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| T |
10819809 |
cagaaatagaagaagggtcacttccaaattggttttctgtgcatgaaaggaagcttttgcagtctaagtctccaatgaagttcaatcttgtggtggcaaa |
10819908 |
T |
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| Q |
145 |
agatggttctggtcagtacaagactgtgcaagctgctttaaatgctgctgctaagagaaaatataagacaaggtttgtgatacatgttaagaaaggtgtt |
244 |
Q |
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| T |
10819909 |
agatggttctggacagtacaagactgtgcaagctgctttaaatgctgctgctaagagaaaatacaagacaaggtatgtgatacatgtgaagaaaggtgtt |
10820008 |
T |
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| Q |
245 |
tatagagagaacattgaggttgctgt |
270 |
Q |
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| T |
10820009 |
tataaagagaacattgaggttgctgt |
10820034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 38 - 267
Target Start/End: Complemental strand, 18785528 - 18785299
Alignment:
| Q |
38 |
tcacttgcagaaacagaagaagggtcatttccaaattggttttctgtgcatgaaaggaagcttttgcagtctaagtctccagtaaagtacaatcttgtgg |
137 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
18785528 |
tcacttgcagaaacagaagaagggtcatttccaaattggttttctatgcatgaaaggaagcttttgcagtctaagtctccagtaaagtacaatattgtgg |
18785429 |
T |
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| Q |
138 |
tggcaaaagatggttctggtcagtacaagactgtgcaagctgctttaaatgctgctgctaagagaaaatataagacaaggtttgtgatacatgttaagaa |
237 |
Q |
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| T |
18785428 |
tggcaaaagatggttctggacagtacaagactgtgcaagctgctctaaatgctgctgctaagagaaaatataagacaaggtttgtgatacatgtgaagaa |
18785329 |
T |
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| Q |
238 |
aggtgtttatagagagaacattgaggttgc |
267 |
Q |
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| T |
18785328 |
aggtgtttataaagagaacattgaggttgc |
18785299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 173 - 266
Target Start/End: Complemental strand, 12803590 - 12803497
Alignment:
| Q |
173 |
caagctgctttaaatgctgctgctaagagaaaatataagacaaggtttgtgatacatgttaagaaaggtgtttatagagagaacattgaggttg |
266 |
Q |
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|||| |||| |||||||||||| | ||||| | ||| ||||| ||||| |||| ||| ||||||||||||||||||||||| |||| ||||| |
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| T |
12803590 |
caagatgctataaatgctgctgggaggagaaggtttaaaacaagatttgttatacgtgtgaagaaaggtgtttatagagagaatattgtggttg |
12803497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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