View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19553_high_7 (Length: 237)
Name: NF19553_high_7
Description: NF19553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19553_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 23876609 - 23876829
Alignment:
| Q |
1 |
ctgtcaccactgtatagaaactatcaaaacgacattgcatgttcttcgcggttgtctcttagcaatggtgacttaatgcggttgattatggatgtttatg |
100 |
Q |
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| T |
23876609 |
ctgtcaccactgtatagaaactatcaaaacgacattgcatgttcttcgcggttgtctcttagcaatggtgacttaacgcggttgattatggatgtttatg |
23876708 |
T |
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| Q |
101 |
gtgtttcgtgaggaggaagccttggagtggactgatttttggacgtcatactttgtgtcaactaggtaatccttggcgtgttaattgttatccggttagt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
23876709 |
gtgtttcgtgaggaggaagccttggagtggactgatttttggacgtcatactttgtgtcaactaggtaatccttggcgtgttaattgttatgtggttagt |
23876808 |
T |
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| Q |
201 |
gctaaaactgcttctgagcag |
221 |
Q |
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||||||||||||||||||||| |
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| T |
23876809 |
gctaaaactgcttctgagcag |
23876829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 20 - 140
Target Start/End: Complemental strand, 23422477 - 23422357
Alignment:
| Q |
20 |
actatcaaaacgacattgcatgttcttcgcggttgtctcttagcaatggtgacttaatgcggttgattatggatgtttatggtgtttcgtgaggaggaag |
119 |
Q |
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||||||||||| |||| |||||||||| ||| ||||| ||||||||||||| ||||| | ||||||||||||||| |||||| || || ||||||||| |
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| T |
23422477 |
actatcaaaacaacatcgcatgttctttgcgattgtcccttagcaatggtggcttaacggggttgattatggatgcatatggtattgagttaggaggaag |
23422378 |
T |
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| Q |
120 |
ccttggagtggactgattttt |
140 |
Q |
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| T |
23422377 |
ctttggattggactggttttt |
23422357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 166 - 220
Target Start/End: Complemental strand, 23422284 - 23422230
Alignment:
| Q |
166 |
gtaatccttggcgtgttaattgttatccggttagtgctaaaactgcttctgagca |
220 |
Q |
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|||||||||||| |||||||||||| | ||||| |||||||||||||||||||| |
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| T |
23422284 |
gtaatccttggcaagttaattgttatgcagttagggctaaaactgcttctgagca |
23422230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 69
Target Start/End: Complemental strand, 23420388 - 23420327
Alignment:
| Q |
8 |
cactgtatagaaactatcaaaacgacattgcatgttcttcgcggttgtctcttagcaatggt |
69 |
Q |
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||||| ||||| |||||| |||||||||||||||||||||||| ||||| | || ||||||| |
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| T |
23420388 |
cactgaatagatactatcgaaacgacattgcatgttcttcgcgattgtcccatatcaatggt |
23420327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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