View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19553_low_6 (Length: 242)
Name: NF19553_low_6
Description: NF19553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19553_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 1624010 - 1623781
Alignment:
| Q |
1 |
ctatttagttttttctagttttaaagccctaaaattcaatagtaaatcagtgttgaaaattagatgtcacggaaatgtgctctttatatcatagctatat |
100 |
Q |
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| T |
1624010 |
ctatttagttttttctagttttaaagccctaaaattcaatagtaaatcagtgttgaaaattagatgtcatggaaatgtgctctttatatcatagctatat |
1623911 |
T |
|
| Q |
101 |
atgatattcataagtgtctaatggctttcttgcaacttgtctagcacgaacactttagagtttagaatgttatttatagtttctaatttttacatatttc |
200 |
Q |
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||||||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1623910 |
atgatattcataattctctaatggctttcttgcaacttgtctaacacgaacactttagagtttagaatgttatttatagtttctaatttttacatatttc |
1623811 |
T |
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| Q |
201 |
tcttgaatcttttaaatttaggcattgatg |
230 |
Q |
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| T |
1623810 |
tcttgaatcttttaaattcaggcattgatg |
1623781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 19 - 230
Target Start/End: Complemental strand, 1606873 - 1606659
Alignment:
| Q |
19 |
ttttaaagccctaaaattcaatagtaaatcagtgttgaaaattagatgtcacggaaatgtgctctttatatcatagctatatatgatattcataagtgtc |
118 |
Q |
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| T |
1606873 |
ttttaaagccctaaaattcaatactaaatcagtgtttaaaactagttgtcacggaaatgtgctctttatatcataggtatatatgatattcatactggtc |
1606774 |
T |
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| Q |
119 |
taatggctttcttgcaacttgtctagcacgaacactt--tagagtttagaatgttatttatagtttctaa-tttttacatatttctcttgaatcttttaa |
215 |
Q |
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| T |
1606773 |
taatggctttcttgcaacttatgtagcacgaacactttatagagtttagattgttatttatagtttctaattttttacatatttctcttggatcatttaa |
1606674 |
T |
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| Q |
216 |
atttaggcattgatg |
230 |
Q |
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| T |
1606673 |
atttaggtattgatg |
1606659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 142 - 230
Target Start/End: Complemental strand, 18781563 - 18781475
Alignment:
| Q |
142 |
tagcacgaacactttagagtttagaatgttatttatagtttctaatttttacatatttctcttgaatcttttaaatttaggcattgatg |
230 |
Q |
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||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
18781563 |
tagcacggacactttagagtttagattgttatttatagtttctaatttttacatatttctcttgaatcttttaaattcaggcattgatg |
18781475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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