View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19554_high_3 (Length: 381)
Name: NF19554_high_3
Description: NF19554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19554_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 12 - 369
Target Start/End: Complemental strand, 26775838 - 26775487
Alignment:
| Q |
12 |
gaaccctacaaattaacaacgttggataaaggaaaaacaaagctagttcaaattaaagttgggaatgttgcttgtttcacacagctgagttgaataaagc |
111 |
Q |
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| T |
26775838 |
gaaccctacaaattaacaacgttggataaaggaaaaacaaacctagttcaaattaaagttgtgaatgttgcttgtttcacacagttgagttgaataaagc |
26775739 |
T |
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| Q |
112 |
tttcattcattattatataaatagactatagactattaccgttgttagttacttattgttagctcctgtcnnnnnnntaattcccctattgtttgtggta |
211 |
Q |
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| T |
26775738 |
tttcattcattattatataaatagactat-------taccgttattagttacttattgttagctcctgtcaaaaaaataattcccctattgtttgtggta |
26775646 |
T |
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| Q |
212 |
ctttttattttgcggattgatgacatggcatagcagagtt-gatcacacggattgatgacatgtcaaattcatttaatatataaaactgatattgcgcaa |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
26775645 |
ctttttattttgcggattgatgacatggcatagcagagtttgatcacacggattgatgagatgtcaaattcatttaatatataaaactgatattgcgcaa |
26775546 |
T |
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| Q |
311 |
tctttggagggtttagcagttaagatattgcgcaaccaaaagactaaaagggaaaaggt |
369 |
Q |
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| T |
26775545 |
tctttggagggtttagcagttaagatattgcgcaaccaagagactaaaagggaaaaggt |
26775487 |
T |
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