View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19554_high_4 (Length: 352)
Name: NF19554_high_4
Description: NF19554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19554_high_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 18 - 342
Target Start/End: Original strand, 652054 - 652374
Alignment:
| Q |
18 |
attacttcatatccatttcatctaattaactttaaagaaatgtgagtgttgagttctatttgaattactatattttaggttcaagggaatccaaagaagc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
652054 |
attacttcatatccatttcatctaattaactttaaagaaatgtgagtgttgagttctatttgaattactatattttaggttcaagggaatccaaagaagc |
652153 |
T |
|
| Q |
118 |
aaatgcacgccttagatttgtatatttccctttcacaaaggtaacacaaataaattgcctatagtattggactttgtctatcttggatctcataatcaag |
217 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
652154 |
aaatgcacaccttagatttgtatatttccctttcacaaaggtaacacaaataaattgcctatagtattggactttgtctatcttggatctcataatcaag |
652253 |
T |
|
| Q |
218 |
accagtcaattgaatgttatgtacataattacagggaaaggagagtattgagagagttttggaaactttgaaggatgacggtcatattataaaagaaaac |
317 |
Q |
| |
|
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
652254 |
accagtcaaatgaatgttatg----taattacagggaaaggagagtattgagagagttttggaaactttgaaggatgatggtcatattataaaagaaaac |
652349 |
T |
|
| Q |
318 |
ttccaaaactttagtcgggtctctg |
342 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
652350 |
ttccaaaactttagtcgggtctctg |
652374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 57 - 337
Target Start/End: Original strand, 687999 - 688279
Alignment:
| Q |
57 |
atgtgagtgttgagttctatttgaattactatattttaggttcaagggaatccaaagaagcaaatgcacgccttagatttgtatatttccctttcacaaa |
156 |
Q |
| |
|
||||||||||||| |||| ||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||| ||||||||||||||| || | |
|
|
| T |
687999 |
atgtgagtgttgatttctgtttgaataactatattttaggttcaagggaattccaagaagcaaatgcacgccttagattcgtatatttccctttctcaga |
688098 |
T |
|
| Q |
157 |
ggtaacacaaataaattgcctatagtattggactttgtctatcttggatctcataatcaagaccagtcaattgaatgttatgtacataattacagggaaa |
256 |
Q |
| |
|
||||| |||||||| |||||| |||||||||||||||||| ||||||||||||||||||||| |||| |||| |||||||| ||||| ||||||| |
|
|
| T |
688099 |
ggtaatggaaataaatagcctattgtattggactttgtctataatggatctcataatcaagaccaatcaaatgaacactatgtacacaattatagggaaa |
688198 |
T |
|
| Q |
257 |
ggagagtattgagagagttttggaaactttgaaggatgacggtcatattataaaagaaaacttccaaaactttagtcgggt |
337 |
Q |
| |
|
|||||| |||||||| |||||||||| ||| | || ||||||| | |||||||| || | |||| |||||||||||||||| |
|
|
| T |
688199 |
ggagagcattgagagggttttggaaaatttaacggctgacggttacattataaaggagagcttcgaaaactttagtcgggt |
688279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University