View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19554_high_5 (Length: 342)
Name: NF19554_high_5
Description: NF19554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19554_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 18 - 332
Target Start/End: Original strand, 5684613 - 5684927
Alignment:
| Q |
18 |
agtaatgaaccaaattgtgctatagcctcaacttctacttcatcttcactaagcctaaagaaaaagttgcaacaagaacacattttttcagctgggattt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5684613 |
agtaatgaaccaaattgtgctatagcctcaacttctacttcatcttcactaagcctaaagaaaaagttgcaacaagaacacattttttcagctgggattt |
5684712 |
T |
|
| Q |
118 |
tctcattcaagcctatnnnnnnnccaaaattttgtgacaaaaaacatagtattcataaccttaagaaacaacatagatatgtgaaaaatttggaacaatc |
217 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
5684713 |
tctcattcaagcctataaaaaaaccaaaattttgtgacaaaaaacatagtattcataaccttaagaaacaacatagttatgtgaaaaatttggaacaatc |
5684812 |
T |
|
| Q |
218 |
aaaaatttcaagcaaaaataaagtacctaatgaagttgaagatttcttcttttttcctccaaacccnnnnnnnccaccacctattatccctaatccactt |
317 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
5684813 |
aaaattttcaagcaaaaataaagtacctaatgaagttgaagatttcttcttttttcctccaaaccctttttttccaccacctattatccctaatccactt |
5684912 |
T |
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| Q |
318 |
caacctccacctttg |
332 |
Q |
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||||||||||||||| |
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| T |
5684913 |
caacctccacctttg |
5684927 |
T |
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