View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19554_high_8 (Length: 281)
Name: NF19554_high_8
Description: NF19554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19554_high_8 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 39210174 - 39209926
Alignment:
| Q |
1 |
gtttgttttattattagtggctccaatgtgcatgttggttatgcaccactgttttattcgagtcactctttatgattggcgctacaaattgctggctaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39210174 |
gtttgttttattattagtggctccaatgtgcatgttggttatgcaccactgttttattcgagtcactctttatgattggcgctacaaattgctggctaga |
39210075 |
T |
|
| Q |
101 |
aatgaccgtaaaggtttttgatttgatgcactgagttgtaggatgtggatcagtattcgtgttggtggtctggtccattactcacccttaaagatctaga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |
|
|
| T |
39210074 |
aatgaccgtaaaggtttttgatttgatgcactgagttgtaggatgtggatcagtattcgtgttggtggtctggtccattattcatccttaaagatctaga |
39209975 |
T |
|
| Q |
201 |
ttatatgttgtaaacattcacccatttcttttttgcaatttggcttcaa |
249 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39209974 |
ttatatgttgtaaacattcacccatttcttttttgcaatttggcttcaa |
39209926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University