View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19554_low_1 (Length: 710)
Name: NF19554_low_1
Description: NF19554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19554_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 630; Significance: 0; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 630; E-Value: 0
Query Start/End: Original strand, 11 - 692
Target Start/End: Complemental strand, 13103082 - 13102401
Alignment:
| Q |
11 |
cacagagacattgagattgtatcctgttgttcctattgtatgtaccttctaccaatttcttcgaaaccatcttaagttattttttccttgcttgacagaa |
110 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13103082 |
cacagagacattgagattgtatcctgttgttcctattgtatgtaccttctaccaatttcttcgaaaccatcttaagttattttttccttgcttgacagaa |
13102983 |
T |
|
| Q |
111 |
tttttatattagggtgcttacgatttgattctttcatgtcattgtaatctctgctagattttgttgacattattgtgtgtttggtatgatattatttttc |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| ||||||| |
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| T |
13102982 |
tttttatattagggtgcttacgatttgattctttcatgtcattgtaatctctgctagattttgttgacattcttgtgtgattggtatgatatcatttttc |
13102883 |
T |
|
| Q |
211 |
aaggatggaagaactgcagatgcacctgatattcttcctgatggacacaaactggaaaagggagacggagtgaactacttggcctatgctatgggtcgaa |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13102882 |
aaggatggaagaactgcagatgcacctgatattcttcctgatggacacaaactggaaaagggagacggagtgaactacttggcctatgctatgggtcgaa |
13102783 |
T |
|
| Q |
311 |
tgtcttccatttggggggaagacgccaatgaatttcgtccagaaagatggattaacaacggaattttccagcccgaatcgccattcaaattcgtagcatt |
410 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
13102782 |
tgtcttccatatggggggaagacgccaatgaatttcgtccagaaagatggattaacaacggaattttccagcccgaatcaccattcaaattcgtagcatt |
13102683 |
T |
|
| Q |
411 |
ccatgtaatttgtacatttatgttccttcaaattttattgcttgataagacttttttatgacacattatagtgtgtatgtttccatgtttcaatgcaggc |
510 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
13102682 |
ccatgtaatttgtacatttatgttccttcaaattttaatgcttgataagactcttttatgacacattatagtgtgtaagtttccatgtttcaatgcaggc |
13102583 |
T |
|
| Q |
511 |
tggaccacgaatgtgcttagggaaggactttgcatacagacaaatgaaaatagttgcaatgtgtcttcttaatttcttcaaatttaaattggcaaatgga |
610 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
13102582 |
tggaccacgtatgtgcttagggaaggactttgcatacagacaaatgaaaatagttgcaatgtgtgttcttaatttcttcaaatttaaattggcaaatgga |
13102483 |
T |
|
| Q |
611 |
acacaaaatgtgacttataaggtcatgtttacccttcacttggacaagggccttcctctcactgcaattccaaggtcatgat |
692 |
Q |
| |
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| T |
13102482 |
acacaaaatgtgacttataaggtcatgtttacccttcacttggacaagggcctccctctccatgcaattccaaggtcatgat |
13102401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 165 - 692
Target Start/End: Complemental strand, 13113769 - 13113242
Alignment:
| Q |
165 |
tagattttgttgacattattgtgtgtttggtatgatattatttttcaaggatggaagaactgcagatgcacctgatattcttcctgatggacacaaactg |
264 |
Q |
| |
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||||||||| ||| ||| |||||| || | ||||||| ||||||||||||||||||||||||| ||||| || ||| ||||||| ||||||||||||||| |
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| T |
13113769 |
tagattttgatgatatttttgtgtctt-gttatgatactatttttcaaggatggaagaactgctgatgcgccggatgttcttcccgatggacacaaactg |
13113671 |
T |
|
| Q |
265 |
gaaaagggagacggagtgaactacttggcctatgctatgggtcgaatgtcttccatttggggggaagacgccaatgaatttcgtccagaaagatggatta |
364 |
Q |
| |
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|||||||| || |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| |
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|
| T |
13113670 |
gaaaagggcgatggagtgtattacttggcctatgctatgggtcgaatgtcttccatttggggggaagacgccgatgaatttcgtcctgaaagatggatta |
13113571 |
T |
|
| Q |
365 |
acaacggaattttccagcccgaatcgccattcaaattcgtagcattccatgtaatttgtacatttatgttccttcaaattttattgcttgataagacttt |
464 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| | |||||||||||||||||||||||||||||||| |
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|
| T |
13113570 |
cagacggaattttccaacccgaatcgccattcaaattcgtagcattccatgtaatttgtaaatttgttttccttcaaattttattgcttgataagacttt |
13113471 |
T |
|
| Q |
465 |
ttt-atgacacattatagtgtgtatgtttccatgtttcaatgcaggctggaccacgaatgtgcttagggaaggactttgcatacagacaaatgaaaatag |
563 |
Q |
| |
|
||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13113470 |
ttttatgacatattatagtgtgtaagtttccatgtttcaatgcaggctggaccacgaatgtgcttagggaaggactttgcatacagacaaatgaaaatag |
13113371 |
T |
|
| Q |
564 |
ttgcaatgtgtcttcttaatttcttcaaatttaaattggcaaatggaacacaaaatgtgacttataaggtcatgtttacccttcacttggacaagggcct |
663 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13113370 |
ttgcaatgtgtgttcttaatttcttcaaatttaaattggcaaatggaacacaaaatgtgacttataaggtcatgtttacccttcacttggacaagggcct |
13113271 |
T |
|
| Q |
664 |
tcctctcactgcaattccaaggtcatgat |
692 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
13113270 |
ccctctcactgcaattccaaggtcatgat |
13113242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 141 - 689
Target Start/End: Complemental strand, 13095622 - 13095062
Alignment:
| Q |
141 |
ctttcatgtcattgtaatctctgctagattttgttgacattattgtgtgtttggtatgatattatttttcaaggatggaagaactgcagatgcacctgat |
240 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| ||||||||||||||||||||||||| |||||||||||| |
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| T |
13095622 |
ctttcatgtcattgtaatctctgctagattttgttgacattcttgtgtctttggtatgatactatttttcaaggatggaagaactgcggatgcacctgat |
13095523 |
T |
|
| Q |
241 |
attcttcctgatggacacaaactggaaaagggagacggagtgaactacttggcctatgctatgggtcgaatgtcttccatttggggggaagacgccaatg |
340 |
Q |
| |
|
|||||||||||||| ||||||||| |||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | | |
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|
| T |
13095522 |
attcttcctgatggccacaaactgcaaaagggagacgcagtgaactacatggcctatgctatgggtcgaatgtcttccatttggggggaagacgccgaag |
13095423 |
T |
|
| Q |
341 |
aatttcgtccagaaagatggattaacaacggaattttccagcccgaatcgccattcaaattcgtagcattccatgtaatttgtacatttatgttccttca |
440 |
Q |
| |
|
|||||||||| ||||||||||||| ||||||||||||| |||||||| ||||||||||| |||||||| |||||||||||||||||||| |||||| | |
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|
| T |
13095422 |
aatttcgtcctgaaagatggattacagacggaattttccaacccgaatcaccattcaaatttgtagcatttcatgtaatttgtacatttattttccttta |
13095323 |
T |
|
| Q |
441 |
aa-ttttattgcttgat-aagactt----------ttttatgacacattatagtgtgtatgtttccatgtttcaatgcaggctggaccacgaatgtgctt |
528 |
Q |
| |
|
|| |||| || || ||| |||| || ||| |||| | ||||| || ||| |||| | |||||| || |||||||||| || |||||||| |
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|
| T |
13095322 |
aatttttctttctcgataaagaattaatttcgttctttaatgatatattatggtacgtaagttttcgtgtttctttgtaggctggacctcgtatgtgctt |
13095223 |
T |
|
| Q |
529 |
agggaaggactttgcatacagacaaatgaaaatagttgcaatgtgtcttcttaatttcttcaaatttaaattggcaaatggaacacaaaatgtgacttat |
628 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13095222 |
agggaaggactttgcatacagacaaatgaaaatagttgcaatgtgtgttcttaatttcttcaaatttaaattggcaaatggaacacaaaatgtgacttat |
13095123 |
T |
|
| Q |
629 |
aaggtcatgtttacccttcacttggacaagggccttcctctcactgcaattccaaggtcat |
689 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |
|
|
| T |
13095122 |
aaggtaatgtttacccttcacttggacaagggcctccctctccatgcaattccaaggtcat |
13095062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 165 - 587
Target Start/End: Original strand, 18670853 - 18671277
Alignment:
| Q |
165 |
tagattttgttgacattattgtgtgtttggtatgatattatttttcaaggatggaagaactgcagatgcacctgatattcttcctgatggacacaaactg |
264 |
Q |
| |
|
||||||||| ||| ||| |||||| || | ||||||| ||||||||||||||||||||||||| ||||| || ||| ||||||| |||||||||||| || |
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|
| T |
18670853 |
tagattttgatgatatttttgtgtctt-gttatgatactatttttcaaggatggaagaactgctgatgcgccggatgttcttcccgatggacacaaagtg |
18670951 |
T |
|
| Q |
265 |
gaaaagggagacggagtgaactacttggcctatgctatgggtcgaatgtcttccatttggggggaagacgccaatgaatttcgtccagaaagatggatta |
364 |
Q |
| |
|
|||||||| || |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| | |||||||| |||| ||||||||||||| |
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|
| T |
18670952 |
gaaaagggcgatggagtgtactacttggcctatgctatgggtcgaatgtcttccatctggggggaagacgtcgatgaattttgtcctgaaagatggatta |
18671051 |
T |
|
| Q |
365 |
acaacggaattttccagcccgaatcgccattcaaattcgtagcattccatgtaatttgtacatttatgttccttcaaattttattgcttgataagac--- |
461 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |||| | ||||||||||||||||||||||||||||| |
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|
| T |
18671052 |
acaacggaattttccagcctgaatcaccattcaaattcgtagcattccatgtaatttgtaaatttgttttccttcaaattttattgcttgataagacctt |
18671151 |
T |
|
| Q |
462 |
ttttttatgacacattatagtgtgtatgtttccatgtttcaatgcaggctggaccacgaatgtgcttagggaaggactttgcatacagacaaatgaaaat |
561 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18671152 |
ttttttatgacacattatagtgtgtaagtttccatgtttcaatgcaggctggaccacgaatgtgcttagggaaggactttgcatacagacaaatgaaaat |
18671251 |
T |
|
| Q |
562 |
agttgcaatgtgtcttcttaatttct |
587 |
Q |
| |
|
||||||||||||| |||||||||||| |
|
|
| T |
18671252 |
agttgcaatgtgtgttcttaatttct |
18671277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 11 - 94
Target Start/End: Complemental strand, 13114056 - 13113973
Alignment:
| Q |
11 |
cacagagacattgagattgtatcctgttgttcctattgtatgtaccttctaccaatttcttcgaaaccatcttaagttattttt |
94 |
Q |
| |
|
||||||||||||||||||||| ||||| | ||| ||||||||||||||||||||||||||| |||||||||| | |||||||| |
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| T |
13114056 |
cacagagacattgagattgtaccctgtactccctgttgtatgtaccttctaccaatttcttcaaaaccatcttgaattattttt |
13113973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 504 - 564
Target Start/End: Complemental strand, 13077132 - 13077072
Alignment:
| Q |
504 |
tgcaggctggaccacgaatgtgcttagggaaggactttgcatacagacaaatgaaaatagt |
564 |
Q |
| |
|
|||||||||| ||||| || |||||||| ||||||||||| || || |||||||||||||| |
|
|
| T |
13077132 |
tgcaggctggtccacgtatatgcttaggaaaggactttgcttataggcaaatgaaaatagt |
13077072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 504 - 564
Target Start/End: Complemental strand, 13084136 - 13084076
Alignment:
| Q |
504 |
tgcaggctggaccacgaatgtgcttagggaaggactttgcatacagacaaatgaaaatagt |
564 |
Q |
| |
|
|||||||||| ||||| || |||||||| ||||||||||| || || |||||||||||||| |
|
|
| T |
13084136 |
tgcaggctggtccacgtatatgcttaggaaaggactttgcttataggcaaatgaaaatagt |
13084076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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