View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19554_low_11 (Length: 238)
Name: NF19554_low_11
Description: NF19554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19554_low_11 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 18 - 226
Target Start/End: Complemental strand, 6132664 - 6132456
Alignment:
| Q |
18 |
aaaccatgcctggattacgccatctccagctttttggaaacaagatgactaatgatggtttgcttgctattcttgatggctgtcttcaccttgaatctct |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6132664 |
aaaccatgcctggattacgccatctccagctttttggaaacaagatgactaatgatggtttgcttgctattcttgatggctgtcttcaccttgaatctct |
6132565 |
T |
|
| Q |
118 |
cgacatacgccaatgtttcaacattaattttaatttggtagcaagtgtggggaagagatttatagaacaagtcaagtatttacggcttccatatgatgcc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6132564 |
cgacatacgccaatgtttcaacattaattttaatttggtagcaagtgtggggaagagatttatagaacaagtcaagtatttacggcttccatatgatgcc |
6132465 |
T |
|
| Q |
218 |
actgatgat |
226 |
Q |
| |
|
||||||||| |
|
|
| T |
6132464 |
actgatgat |
6132456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 18 - 138
Target Start/End: Original strand, 6043477 - 6043597
Alignment:
| Q |
18 |
aaaccatgcctggattacgccatctccagctttttggaaacaagatgactaatgatggtttgcttgctattcttgatggctgtcttcaccttgaatctct |
117 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||||||||||||||||| |||||||||||||| ||||||||||||||| |||| || |||||||||||| |
|
|
| T |
6043477 |
aaaccatgcctgggttacgccatctccaactttttggaaacaagatgagtaatgatggtttgcgtgctattcttgatggttgtcctctccttgaatctct |
6043576 |
T |
|
| Q |
118 |
cgacatacgccaatgtttcaa |
138 |
Q |
| |
|
|||||||| || |||||||| |
|
|
| T |
6043577 |
tgacatacgtcagtgtttcaa |
6043597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 22 - 225
Target Start/End: Original strand, 6053584 - 6053781
Alignment:
| Q |
22 |
catgcctggattacgccatctccagctttttggaaacaagatgactaatgatggtttgcttgctattcttgatggctgtcttcaccttgaatctctcgac |
121 |
Q |
| |
|
||||||||| || ||||||||||||||| | |||||| |||||||||||||||| ||| ||||| ||||||||||||||| ||||||||||||||| ||| |
|
|
| T |
6053584 |
catgcctgggttgcgccatctccagcttatcggaaacgagatgactaatgatggcttggttgctcttcttgatggctgtcctcaccttgaatctcttgac |
6053683 |
T |
|
| Q |
122 |
atacgccaatgtttcaacattaattttaatttggtagcaagtgtggggaagagatttatagaacaagtcaagtatttacggcttccatatgatgccactg |
221 |
Q |
| |
|
||||| | |||||| ||| |||||||||||| || | |||||||| ||| || ||| || |||||||||| ||||||||| |||| ||||||| |
|
|
| T |
6053684 |
atacgtcggtgtttc------aatgttaatttggtaggaactttggggaagcgatgtaaagagcagatcaagtattttcggcttccacatgacgccactg |
6053777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 17 - 138
Target Start/End: Original strand, 6046777 - 6046898
Alignment:
| Q |
17 |
aaaaccatgcctggattacgccatctccagctttttggaaacaagatgactaatgatggtttgcttgctattcttgatggctgtcttcaccttgaatctc |
116 |
Q |
| |
|
|||||||||||||| |||||||||||| |||| ||||||||||||||| ||| |||||||||| ||||||||||||||| |||| |||||||||||||| |
|
|
| T |
6046777 |
aaaaccatgcctgggttacgccatctcatgcttgttggaaacaagatgagtaaggatggtttgcgtgctattcttgatggttgtcctcaccttgaatctc |
6046876 |
T |
|
| Q |
117 |
tcgacatacgccaatgtttcaa |
138 |
Q |
| |
|
| |||||||| || |||||||| |
|
|
| T |
6046877 |
ttgacatacgtcagtgtttcaa |
6046898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 113
Target Start/End: Original strand, 6038050 - 6038123
Alignment:
| Q |
40 |
tctccagctttttggaaacaagatgactaatgatggtttgcttgctattcttgatggctgtcttcaccttgaat |
113 |
Q |
| |
|
|||||||||||| || || |||| |||||| | |||||||| |||||||||||||| |||| ||||||||||| |
|
|
| T |
6038050 |
tctccagcttttcagagacgagataactaataaaggtttgctggctattcttgatggttgtcctcaccttgaat |
6038123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University