View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19554_low_2 (Length: 599)
Name: NF19554_low_2
Description: NF19554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19554_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 334 - 588
Target Start/End: Complemental strand, 2531056 - 2530803
Alignment:
| Q |
334 |
cactttgcttcaaaattgttgtgaaagattcatgtgtttcatcacacttcacgtgcacaaataatccattgtttcatagtcaaacaaatcaatagtacat |
433 |
Q |
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| T |
2531056 |
cactttgcttcaaaattgttgtgaaagattcatgtgtttcatcacacttcacgtgcacaaataatccattgtttcatagtcaaacaa-tcaatagtacat |
2530958 |
T |
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| Q |
434 |
ttcttcaaatgttcttaccataatcttcttgcttaatttttctgttctttcttcatcatgtgtgaaaccaatactcactcatcatgttgaggtaaacttt |
533 |
Q |
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| T |
2530957 |
ttcttcaaatgttcttaccataatcttcttgcttaatttttctgttctttcttcatcatgtgtgaaaccaagactcactcatcattttgaggtaaacttt |
2530858 |
T |
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| Q |
534 |
tgttggtcaattcaagtgtcaacaaagtttcttttcatttttgtggtttgatatt |
588 |
Q |
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| T |
2530857 |
tgttggtcaattcaagtgtcaacaaagtttcttttcatttttgtggtttgatatt |
2530803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 18 - 259
Target Start/End: Complemental strand, 2531377 - 2531133
Alignment:
| Q |
18 |
acgtacaacatatgcaagactaataaattttcaaccacccatttgcgagtgcatttatgtttctttggcgtatgtatcataat---cttagtcaaagtgg |
114 |
Q |
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| T |
2531377 |
acgtacaacatatgcaagactaataaattttcaaccacccatttgcgggtgcatttatgtttctttggcgtatgtatcataataatcttagtcaaagtgg |
2531278 |
T |
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| Q |
115 |
tctcaattttttgcaattttaatttcaaattttaatgaagaaaaacaaagcnnnnnnntctattggcttgcaactatgtatgaatctcacctcatatcat |
214 |
Q |
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| T |
2531277 |
tctcaattttttgcaattttaatttcaaattttaatgaagaaaaacaaagcaaaaaaatctattggcttgcaactatgtatgaatctcacctcatatcat |
2531178 |
T |
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| Q |
215 |
atcatacacaaacaaatatccaagtgccagcctttctaagctgta |
259 |
Q |
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| T |
2531177 |
atcatacacaaacaaatatccaagtgccagcctttctaagctgta |
2531133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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