View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19554_low_8 (Length: 304)
Name: NF19554_low_8
Description: NF19554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19554_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 277; Significance: 1e-155; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 6553941 - 6554225
Alignment:
| Q |
1 |
attcaccgtcatatttcaatgggatttatgcagcatctaccctgcaaagattgaaccaacttcctatgtcaccatcacatatgataaccactgttttacc |
100 |
Q |
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| T |
6553941 |
attcaccgtcatatttcgatgggatttatgcagcatctaccctgcaaagattgaaccaacttcctatgtcaccatcacatatgataaccactgttttacc |
6554040 |
T |
|
| Q |
101 |
aacaaataaccatcatattcaatcacctcctttttgggacagaagatatacctatgcagctgaacctataacaccacattgtgttgactttgttcctcat |
200 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6554041 |
aacaaataaccatcatattcaatcacctccattttgggacagaagatatacctatgcagctgaacctataacaccacattgtgttgactttgttcctcat |
6554140 |
T |
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| Q |
201 |
aacatgttccctcatttcggactcaacgtccataaccaaagaggcatggtgtttcctggtagaaaccatatgattaattcatttg |
285 |
Q |
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| T |
6554141 |
aacatgttccctcatttcggactcaacgtccataaccaaagaggcatggtgtttcctggtagaaaccatatgattaattcatttg |
6554225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 161 - 285
Target Start/End: Complemental strand, 49058469 - 49058345
Alignment:
| Q |
161 |
tgaacctataacaccacattgtgttgactttgttcctcataacatgttccctcatttcggactcaacgtccataaccaaagaggcatggtgtttcctggt |
260 |
Q |
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|||| ||||||||||||||| ||||||||||||||||||||||||||||||||| | ||||||||| |||||||||||||||| ||| ||||||||| |
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| T |
49058469 |
tgaatctataacaccacattatgttgactttgttcctcataacatgttccctcactctggactcaacttccataaccaaagagggatgtcttttcctggt |
49058370 |
T |
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| Q |
261 |
agaaaccatatgattaattcatttg |
285 |
Q |
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|| ||||||||| |||| ||||||| |
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| T |
49058369 |
aggaaccatatggttaactcatttg |
49058345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 49058602 - 49058477
Alignment:
| Q |
1 |
attcaccgtcatatttcaatgggatttatgcagcatctaccctgcaaagattgaaccaacttcctatgtcaccatcacatatgataaccactgttttacc |
100 |
Q |
| |
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||||||| |||||||| ||||| |||| ||||||| ||||||| |||| |||||||||||||||||||||||||||||||||||||| |||| |||||| |
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| T |
49058602 |
attcaccatcatatttgaatggaatttgtgcagcacctaccctacaaaaattgaaccaacttcctatgtcaccatcacatatgataagtactgctttacc |
49058503 |
T |
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| Q |
101 |
aacaaataaccatcatattcaatcac |
126 |
Q |
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|| |||||| |||| ||||||||| |
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| T |
49058502 |
aattaataacaatcacgttcaatcac |
49058477 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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