View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19555_high_15 (Length: 464)
Name: NF19555_high_15
Description: NF19555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19555_high_15 |
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Alignment Details
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 232 - 449
Target Start/End: Complemental strand, 40757604 - 40757387
Alignment:
| Q |
232 |
tatagagtatagatgtttgaaaattttaaattatataacaaactcaacaaacccatatgtattcaacatcataatcatattcatactctattgagttact |
331 |
Q |
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| T |
40757604 |
tatagaatatagatgtttgaaaattttaaattatataacaaactcaacaaacccatatgtattcaacatcataatcatattcatactctattgagttact |
40757505 |
T |
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| Q |
332 |
tcaaattcacaccaactcattatcagtcttgttgtaaacacaaagggatctattttagaggtgtttgtttcacctaggaaaaataccaccggcttatatt |
431 |
Q |
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| T |
40757504 |
tcaaattcacaccaactcattatcagtcttgttgtaaacacaaagggatctattttagaggtgtttgtttcacctaggaaaaataccaccggcttatatt |
40757405 |
T |
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| Q |
432 |
atgtcacaagatctaggt |
449 |
Q |
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||||||||||||| |||| |
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| T |
40757404 |
atgtcacaagatccaggt |
40757387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 40757834 - 40757692
Alignment:
| Q |
1 |
tgccttttgtcatgttaaatgtgtaaggaccatttctaagtagtttattctctatcataatagttacccaaaataaacaaaaacaatccacgatcaattc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
40757834 |
tgccttttgtcatgttaaatgtgtaaggaccatttctaagtagtttcttctgtatcataatagttatccaaaataaacaaaaacaatccacgatcaattc |
40757735 |
T |
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| Q |
101 |
accttataatatactagtcgaaagccagacactcatgtgtccg |
143 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||| |
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| T |
40757734 |
accttataatatactagtcgaaagacagacactcatgtgtccg |
40757692 |
T |
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