View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19555_high_16 (Length: 449)
Name: NF19555_high_16
Description: NF19555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19555_high_16 |
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Alignment Details
Target: chr8 (Bit Score: 353; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 17 - 415
Target Start/End: Complemental strand, 34544705 - 34544314
Alignment:
| Q |
17 |
tacgagggcgattgggttgatggacaaatgatagggaatggattgatgataccaggctttctatgtgcatttttgaagactatcagacccattattatct |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34544705 |
tacgagggcgattgggttgatggacaaatgatagggaatggattgatgataccaggctttctatgtgcatttttgaagactatcagacccattattatct |
34544606 |
T |
|
| Q |
117 |
gaagcttaattttcaacgtagcgtcgtgtaagttatttgatctttaatagaattatggaaaactggtatattattatcacctttctatccactgttctat |
216 |
Q |
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|||||||||||||||| || |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34544605 |
gaagcttaattttcaa-------tcatgtaagttatttgatctttaatagtattatggaaaactggtatattattatcacctttctatccactgttctat |
34544513 |
T |
|
| Q |
217 |
acttagttcttttataatcacggccctgtctagaaaattatctgactaatagatcagatggcttcaagtctttatgaaaatggcttcagactgttcgata |
316 |
Q |
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||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34544512 |
acttaattcttttataatcacggccctgtctagaaaattatttgactaatagatcagatggcttcaagtctttatgaaaatggcttcagactgttcgata |
34544413 |
T |
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| Q |
317 |
agttccatgaagttttagtttattagtctataacataagaaataatttattatgtaagttatgcgtttaacgttgtaaactgaaaattagaaacactga |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
34544412 |
agttccatgaagttttagtttattagtctataacataagaaataatttattatgtaagttatgcgtttaacgttgtaaactgaaaattagaaatactga |
34544314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 17 - 347
Target Start/End: Complemental strand, 34916080 - 34915731
Alignment:
| Q |
17 |
tacgagggcgattgggttgatggacaaatgatagggaatggattgatgataccaggctttctatgtgcatttttgaagactatcagacccattattatct |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |||| |
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| T |
34916080 |
tacgagggcgattgggttgatggacaaatgatagggaatggattgatgataccaggctttctatgtacctttttgaagactatcagacccattatcatct |
34915981 |
T |
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| Q |
117 |
gaagcttaattttcaacgtagcgtcgtgtaagttatttgatctttaatagaattatggaaaactggta-------------------tattattatcacc |
197 |
Q |
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||||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||||||||| ||||||| ||| | |
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| T |
34915980 |
gaagcttaattttcaacttagcgtcatgtaagttatttgatctttaatagtattatggaaaactggtatgatattcatggttattattattattttcatc |
34915881 |
T |
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| Q |
198 |
tttctatccactgttctatacttagttcttttataatcacggccctgtctagaaaattatctgactaatagatcagatggcttcaagtctttatgaaaat |
297 |
Q |
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|||||||| ||||||||||||||| || ||||||||||| |||| ||| ||||||||||| |||||||||||||||||||||||||| |||||||||||| |
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| T |
34915880 |
tttctatcaactgttctatacttaattattttataatcatggccttgtatagaaaattatttgactaatagatcagatggcttcaaggctttatgaaaat |
34915781 |
T |
|
| Q |
298 |
ggcttcagactgttcgataagttccatgaagttttagtttattagtctat |
347 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
34915780 |
ggcttcagactgttcgataagttccatgaggttttagtttattagtctat |
34915731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 13 - 164
Target Start/End: Complemental strand, 34538960 - 34538809
Alignment:
| Q |
13 |
aatatacgagggcgattgggttgatggacaaatgatagggaatggattgatgataccaggctttctatgtgcatttttgaagactatcagacccattatt |
112 |
Q |
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||||||||||||||||||||| |||||| ||| || |||||| ||| ||||||||| || || |||| |||| | |||| |||| | | |||||| |
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| T |
34538960 |
aatatacgagggcgattgggtggatggagaaaggacagggaacaaattcatgataccaagccttgtatggagatttcttaagagaatcaaatctattatt |
34538861 |
T |
|
| Q |
113 |
atctgaagcttaattttcaacgtagcgtcgtgtaagttatttgatctttaat |
164 |
Q |
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||||||||||||||||||||| |||| || |||||||||||| ||||||||| |
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| T |
34538860 |
atctgaagcttaattttcaacatagcatcatgtaagttatttcatctttaat |
34538809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 347 - 418
Target Start/End: Complemental strand, 34915695 - 34915624
Alignment:
| Q |
347 |
taacataagaaataatttattatgtaagttatgcgtttaacgttgtaaactgaaaattagaaacactgacag |
418 |
Q |
| |
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||||||||||||||||||||| |||||||||| || ||| |||||||| ||||||| |||| |||||||| |
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| T |
34915695 |
taacataagaaataatttattgcgtaagttatgtgtgtaatgttgtaaatggaaaattggaaatactgacag |
34915624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 13 - 54
Target Start/End: Complemental strand, 34534142 - 34534101
Alignment:
| Q |
13 |
aatatacgagggcgattgggttgatggacaaatgatagggaa |
54 |
Q |
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|||||| |||||||||||||||||||||||||||| |||||| |
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| T |
34534142 |
aatatatgagggcgattgggttgatggacaaatgacagggaa |
34534101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 188 - 236
Target Start/End: Original strand, 39849349 - 39849397
Alignment:
| Q |
188 |
tattatcacctttctatccactgttctatacttagttcttttataatca |
236 |
Q |
| |
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||||||||||||||| || ||||||||||||||| | ||||||||||| |
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| T |
39849349 |
tattatcacctttctttcaactgttctatacttaactattttataatca |
39849397 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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