View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19555_high_22 (Length: 398)
Name: NF19555_high_22
Description: NF19555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19555_high_22 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 350; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 13 - 377
Target Start/End: Complemental strand, 6111268 - 6110903
Alignment:
| Q |
13 |
aatatggcatccacttcaagtaatccaccagaagctgctgtgattaatagagtttattcaacacaagatcaaggtaaatgagttccacttttttactaat |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6111268 |
aatatggcatccacttcaagtaatccaccagaagctgctgtgattaatagagtttattcaacacaagatcaaggtaaatgagttccacttttttactaat |
6111169 |
T |
|
| Q |
113 |
atttggcttccatacatctatactatacatattcagctcatgaattaagtagtatagcatacaatagaaatttattaaagaacttgttaaagtaagtcaa |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
6111168 |
atttggcttccatacatctatactatacatattcagctcatgaattaagtagtatagcatacaatagaaatttcttaaagaacttgttaaagtaagtcaa |
6111069 |
T |
|
| Q |
213 |
ttagatatatattagtgaactagcaaaacgcaagaaaccatagtgctatccaaacaaaaaagaagataaattgggacaatcaagacaacatgaccttaaa |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
6111068 |
ttagatatatattagtgaactagcaaaacgcaagaaaccatagtgctatccaaacaaaaaagaagctaaattgggacaatcaagacaacatgaccttaaa |
6110969 |
T |
|
| Q |
313 |
cccttga-tgcaacagcataccattatacaaaataagcaaaagtgatcgaagtcacacatgagcaa |
377 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6110968 |
cccttgattgcaacagcataccattatacaaaataagcaaaagtgatcgaagtcacacatgagcaa |
6110903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 16 - 92
Target Start/End: Complemental strand, 6183370 - 6183291
Alignment:
| Q |
16 |
atggcatccacttcaagtaatccacca---gaagctgctgtgattaatagagtttattcaacacaagatcaaggtaaatg |
92 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| ||||||||||||| |||||||||||||| ||||||||||||| |
|
|
| T |
6183370 |
atggcatccacttcaagtaatccaccactagaagctcatgtgattaatagactttattcaacacaatatcaaggtaaatg |
6183291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 13 - 49
Target Start/End: Complemental strand, 6090263 - 6090227
Alignment:
| Q |
13 |
aatatggcatccacttcaagtaatccaccagaagctg |
49 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6090263 |
aatatggcatccacttcaagtaatccaccagaagctg |
6090227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 13 - 93
Target Start/End: Complemental strand, 6209828 - 6209748
Alignment:
| Q |
13 |
aatatggcatccacttcaagtaatccaccagaagctgctgtgattaatagagtttattcaacacaagatcaaggtaaatga |
93 |
Q |
| |
|
|||||||||||||||||||||||||||||| | | || | |||||||| |||||||||||||| ||| |||||||||| |
|
|
| T |
6209828 |
aatatggcatccacttcaagtaatccaccatcggaagttgcggttaatagactttattcaacacaatatcgaggtaaatga |
6209748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 105 - 194
Target Start/End: Complemental strand, 6249477 - 6249386
Alignment:
| Q |
105 |
ttactaatatttggcttccatacatctatactatacatattcagctcatgaattaagtag--tatagcatacaatagaaatttattaaagaa |
194 |
Q |
| |
|
||||||||||||| |||| | ||| || |||||| ||||||||||||||||||||| | | |||| ||||||||| ||| ||||||||||| |
|
|
| T |
6249477 |
ttactaatatttgacttctaaacaactttactatgcatattcagctcatgaattaacttgcatatatcatacaataaaaagttattaaagaa |
6249386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University