View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19555_high_24 (Length: 393)
Name: NF19555_high_24
Description: NF19555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19555_high_24 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 1 - 381
Target Start/End: Original strand, 46817433 - 46817819
Alignment:
| Q |
1 |
gtgacataaagcaacataatttgccatgtctaattgtgtactaggaatttgtactttggtagaatcaagagaagttgtaaaattgggtttggaattggaa |
100 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46817433 |
gtgacataaagcaacagaatttgccatgtctaattgtgtactaggaatttgtacttttgtagaatcaagagaagttgtaaaattgggtttggaattggaa |
46817532 |
T |
|
| Q |
101 |
gtgttaaggttgtgttagaacaggaagatgaaaaggggatttatagatagaagacattgataaaa-gaagtgaagattattagtatgtatgatggttggt |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
46817533 |
gtgttaaggttgtgttagaacaggaagatgaaaaggggatttatagatagaagacattgataaaaagaagtgaagattattagtatgtatgatggttggt |
46817632 |
T |
|
| Q |
200 |
taagaagttcaactaccatatctaatcaatgcgaaatgtaagagtttaactgatttaagtaggtaggatttgcatgatgtggcctctgcagaacacaatt |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
46817633 |
taagaagttcaactaccatatctaatcaatgcgaaatgtaagagtttaactgatttaagtaggtaggatttgcatgatgtggcatctgcagaacacaatt |
46817732 |
T |
|
| Q |
300 |
tgggctttggctaagcattt-----ttagattaaatgtttataaagtggcatccaaaatgacctactttgattaagcatcacatatt |
381 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
46817733 |
tgggctttggctaagcatttttaaattaaattaaatgtttataaagtggcatccaaaatgacctactttgatttagcatcacatatt |
46817819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University