View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19555_high_3 (Length: 713)

Name: NF19555_high_3
Description: NF19555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19555_high_3
NF19555_high_3
[»] chr1 (1 HSPs)
chr1 (1-667)||(7443029-7443696)


Alignment Details
Target: chr1 (Bit Score: 501; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 1 - 667
Target Start/End: Original strand, 7443029 - 7443696
Alignment:
Q  1 tctttgatttcttaacttatgatcttaagcacttgttaacannnnnnn--atttgtatacatcaaactgttttaccctaatcaatgtatctcctacgcgc 98  Q
    |||||||||||||||||| ||||||||||||||||||||||         ||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  7443029 tctttgatttcttaacttgtgatcttaagcacttgttaacatttttttttatttgtatacatcaaactgttttcccctaatcaatgtatctcctacgcgc 7443128  T
Q  99 aagtatctcaagaaataactaaattttgtttaaaaaatgtcgtttcttgctaaatagttttcatacgcattagttagggttcgagctctattagattttt 198  Q
    ||||||||||| |||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  7443129 aagtatctcaataaataactaaattttgtttaaagaatgttgtttcttgctaaatagttttcatacgcattagttagggttcaagctctattagattttt 7443228  T
Q  199 atattggttatgaaccatccttacaaaatttatttgcaaaacgaggggtgcaatattttataaactcatttcaactatatatttatcatattcgaaactt 298  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7443229 atattggttatgaaccatccttacaaaatttgtttgcaaaacgaggggtgcaatattttataaactcatttcaactatatatttatcatattcgaaactt 7443328  T
Q  299 gagtttttctcgatacacccctcacatcgaacaccgttaagtttgatgcgtagatataaatagtggatgtatgaatccataaacttaaatactatattga 398  Q
    ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  7443329 gagtttttctcgatacacccctcatgtcgaacaccgttaagtttgatgcgtagatataaatagtggatgtatgaatccataaacttgaatactatattga 7443428  T
Q  399 attttatattgggtctaatttatatttatcctatcttaaacttgatttttcttctcgataaacactgacacataacaaataatcaagtgtgtaatcattt 498  Q
    ||||||||||||||| || |||||||||||||||| |||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||    
T  7443429 attttatattgggtccaacttatatttatcctatcataaacttgatttttcttctcaataaaca-tgacacataacaaataatcaagtgtgtaatcattt 7443527  T
Q  499 cagagagcatcattttgttgaaaaatacatgattggtcacaactctaaataaaaagtatttgaactcacacacataaaattacacataatttgattattg 598  Q
     ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7443528 tagagatcatcattttgttgaaaaatacatgattggtcacaactctaaataaaaagtatttgaactcacacacataaaattacacataatttgattattg 7443627  T
Q  599 tnnnnnnnnnnnnncatcatttaattctttattcttctatcttttcannnnnnnagtttgtgtctaaat 667  Q
    |             ||||||||||||||||||||||||| |||||||       |||||||||||||||    
T  7443628 taaaaaagaaaaaacatcatttaattctttattcttctaccttttcatttttttagtttgtgtctaaat 7443696  T

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