View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19555_high_33 (Length: 375)
Name: NF19555_high_33
Description: NF19555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19555_high_33 |
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Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 146 - 349
Target Start/End: Complemental strand, 30034871 - 30034668
Alignment:
| Q |
146 |
acaaagaaaaagaatgtattaggctattgatgtgatgatattgaattgagatgaatagaaaggaaagagagaaaacctttgcaggtgataacttgtcctt |
245 |
Q |
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| T |
30034871 |
acaaagaaaaagaatgtattaggctattgatgtgatgatattgaattgagatgaatagaaaggaaagagagaaaacctttgcaggtgataacttgtcctt |
30034772 |
T |
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| Q |
246 |
gagtagccatcgaaatggaatagaatgtggattgtaacgcacagtcaaatgtatgaaatgaaatcacatgaaagagacaaatcccaagtttgtttctaat |
345 |
Q |
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| T |
30034771 |
gagtagccatcgaaatggaatagaatgtggattgtaacgcacagtcaaatgtatgaaatgaaatcacatgaaagagacaaatcccaagtttgtttctaat |
30034672 |
T |
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| Q |
346 |
gata |
349 |
Q |
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|||| |
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| T |
30034671 |
gata |
30034668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 8 - 117
Target Start/End: Complemental strand, 30034997 - 30034888
Alignment:
| Q |
8 |
gagcagagaaaagaatttggattcgaacctcaccagcctgaggtggagccacttgaacgtcctcgatgatcagtggtttgttgggttcccaggccaccgc |
107 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30034997 |
gagcagtgaaaagaatttggattcgaacctcaccagcctgaggtggagccacttgaacgtcctcgatgatcagtggtttgttgggttcccaggccaccgc |
30034898 |
T |
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| Q |
108 |
agctacacaa |
117 |
Q |
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| T |
30034897 |
agctacacaa |
30034888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 111
Target Start/End: Original strand, 39692163 - 39692192
Alignment:
| Q |
82 |
ggtttgttgggttcccaggccaccgcagct |
111 |
Q |
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| T |
39692163 |
ggtttgttgggttcccaggccaccgcagct |
39692192 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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