View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19555_high_34 (Length: 369)
Name: NF19555_high_34
Description: NF19555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19555_high_34 |
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Alignment Details
Target: chr1 (Bit Score: 266; Significance: 1e-148; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 354
Target Start/End: Complemental strand, 63678 - 63325
Alignment:
| Q |
1 |
aagatgcacttgtgtttggtgatctgtcgcagtggagtttgatcctttgcggtggtcttcacgacagaggagaattgtgcctgcatatacgttagtactc |
100 |
Q |
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| T |
63678 |
aagatgcgcttgtgtttggtgatctgtcgcagtggaggttgatcctttgcggtggtcttcacgacggaggagaattgtgtctgcatatacgttagtactc |
63579 |
T |
|
| Q |
101 |
tgatgcttaagtccgtaagagaataaggtgaatatgtgcgaaatgaggtaaaagtggacccgagggtgctctcatgcggtgccgcacaagaagcttagct |
200 |
Q |
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||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||| |
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| T |
63578 |
tgacgctcaagcccgtaagagaataaggtgaatatgtgcgaaatgaggtaaaagtggacccgagggtgctctcgtgcggtgctgcacacgaagcttagcc |
63479 |
T |
|
| Q |
201 |
tggtccatcgccattgtgggccagtttttattgggtcttggcttgtcacgctcgtagttggtccataccattgtccataagttctgactcaactgataaa |
300 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| ||||||||||||| | ||||||||||||||||||||||||||| |
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| T |
63478 |
tggtccatcgccattgtgggccagtctttattgggtcttggcttgtcgcgctcgtaattggtccataccactatccataagttctgactcaactgataaa |
63379 |
T |
|
| Q |
301 |
aatgttgaaattgctaaattgaataccgtaattggggtttgaatctaggtttat |
354 |
Q |
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|||||||||||||||| ||| ||||| ||||||| ||| |||||||||||||| |
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| T |
63378 |
aatgttgaaattgctagattagataccataattggagttcgaatctaggtttat |
63325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 156
Target Start/End: Complemental strand, 31696928 - 31696830
Alignment:
| Q |
58 |
ttcacgacagaggagaattgtgcctgcatatacgttagtactctgatgcttaagtccgtaagagaataaggtgaatatgtgcgaaatgaggtaaaagtg |
156 |
Q |
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| T |
31696928 |
ttcacgacagaggagaattgtgtctacatgcatgttagcactccgaaactcaagttggtatgagaatgaggtggatatgtgtgaaatgtggtaaaagtg |
31696830 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 34 - 94
Target Start/End: Original strand, 31080770 - 31080830
Alignment:
| Q |
34 |
ggagtttgatcctttgcggtggtcttcacgacagaggagaattgtgcctgcatatacgtta |
94 |
Q |
| |
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|||| ||||||||| |||||||||||||||||| |||| ||||||| |||| ||||||| |
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| T |
31080770 |
ggaggttgatccttcgcggtggtcttcacgacataggatgattgtgcttgcaagtacgtta |
31080830 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 39 - 155
Target Start/End: Original strand, 34954814 - 34954930
Alignment:
| Q |
39 |
ttgatcctttgcggtggtcttcacgacagaggagaattgtgcctgcatatacgttagtactctgatgcttaagtccgtaagagaataaggtgaatatgtg |
138 |
Q |
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||||||||||||||||||||| |||| |||||||||||| | ||||| |||||||| | || | ||| || || || |||||| ||||| ||||||| |
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| T |
34954814 |
ttgatcctttgcggtggtctttacgatggaggagaattgtacttgcatgtacgttagcaatccaacgctcaattcactatgagaatgaggtggatatgtg |
34954913 |
T |
|
| Q |
139 |
cgaaatgaggtaaaagt |
155 |
Q |
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|||||| ||||||||| |
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| T |
34954914 |
tgaaatgtggtaaaagt |
34954930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 40 - 156
Target Start/End: Complemental strand, 26888105 - 26887989
Alignment:
| Q |
40 |
tgatcctttgcggtggtcttcacgacagaggagaattgtgcctgcatatacgttagtactctgatgcttaagtccgtaagagaataaggtgaatatgtgc |
139 |
Q |
| |
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|||||||| ||||| |||||||| ||||||| |||||||| || |||||| |||||||||||||||| ||| |||||| ||||| |||||||| |
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| T |
26888105 |
tgatccttcacggtgctcttcacggtggaggagacttgtgccttcaagcgcgttagaactctgatgcttaagttagtatgagaatgaggtggatatgtgc |
26888006 |
T |
|
| Q |
140 |
gaaatgaggtaaaagtg |
156 |
Q |
| |
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||||| |||||||||| |
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| T |
26888005 |
aaaatggggtaaaagtg |
26887989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 58 - 155
Target Start/End: Complemental strand, 48954440 - 48954343
Alignment:
| Q |
58 |
ttcacgacagaggagaattgtgcctgcatatacgttagtactctgatgcttaagtccgtaagagaataaggtgaatatgtgcgaaatgaggtaaaagt |
155 |
Q |
| |
|
|||||| | ||||||||||||||||||| | |||||| ||||| | ||| |||| ||| || ||| ||||| |||||||||||||| ||||||||| |
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| T |
48954440 |
ttcacggcggaggagaattgtgcctgcaaactcgttagcactctcacgctcaagttagtatgaaaatgaggtggatatgtgcgaaatggggtaaaagt |
48954343 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 42 - 156
Target Start/End: Original strand, 4156624 - 4156738
Alignment:
| Q |
42 |
atcctttgcggtggtcttcacgacagaggagaattgtgcctgcatatacgttagtactctgatgcttaagtccgtaagagaataaggtgaatatgtgcga |
141 |
Q |
| |
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|||||| | |||| |||||||| ||||||||||||||| ||||| | | |||| ||||||| |||||||| || || ||| ||||||||||||| || |
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| T |
4156624 |
atccttcgtggtgatcttcacggcagaggagaattgtgtctgcaaacatgttaacactctgacacttaagtcaatatgaaaatgaggtgaatatgtgtga |
4156723 |
T |
|
| Q |
142 |
aatgaggtaaaagtg |
156 |
Q |
| |
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||| |||||||||| |
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| T |
4156724 |
aatatggtaaaagtg |
4156738 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 103
Target Start/End: Original strand, 12200383 - 12200436
Alignment:
| Q |
50 |
cggtggtcttcacgacagaggagaattgtgcctgcatatacgttagtactctga |
103 |
Q |
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| T |
12200383 |
cggtggtctccaagacagaggagaattgtgcctgcaagcacgttagcactctga |
12200436 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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