View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19555_high_42 (Length: 314)
Name: NF19555_high_42
Description: NF19555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19555_high_42 |
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Alignment Details
Target: chr1 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 11 - 297
Target Start/End: Complemental strand, 34604753 - 34604467
Alignment:
| Q |
11 |
acaatgtaaatgagttttttattggctgtatgtataaactaatctactataaataagactagagagttccgaacctctccatttttaaaaataaatggca |
110 |
Q |
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| T |
34604753 |
acaatgtaaatgagttttttattggctgtatgtatgaactaatctactataaataagactagagagttctgaacctctccattttttaaaataaatggtg |
34604654 |
T |
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| Q |
111 |
atatctattactattgttttgttgtataaatgtttaatttggataaagaatgaagtagcgactagcgagagttctaaactttgttgatgtaaatgtaaaa |
210 |
Q |
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| T |
34604653 |
atatctattactattgttttgttgtataaatgtttaatttggataaagaatgaagtagcaactagcgagagttctaaactttgttgatgtaaatgtgaaa |
34604554 |
T |
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| Q |
211 |
accacgaccaatttatggttgttacatttgaacgagaatatgacattctataattgtaatgaaagtaaagatttggggggcatttgt |
297 |
Q |
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| T |
34604553 |
atcacgaccaatttatggttgttacatttgaacgagaatatgacattctataattgtaatgaaagtaaagatttggggggcatttgt |
34604467 |
T |
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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 149
Target Start/End: Complemental strand, 14122842 - 14122782
Alignment:
| Q |
88 |
tccatttttaaaaataaatggcaatatctattactattgttttgttgtataaatgtttaatt |
149 |
Q |
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| T |
14122842 |
tccatttcttaaaataaatgacaatatc-attactataattttgttgtataagtgtttaatt |
14122782 |
T |
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