View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19555_high_44 (Length: 299)
Name: NF19555_high_44
Description: NF19555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19555_high_44 |
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Alignment Details
Target: chr2 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 7 - 284
Target Start/End: Original strand, 43493838 - 43494115
Alignment:
| Q |
7 |
gtagcatggtaaaaccatatatatttattttccacaactttctgcttttgtggtgaacttgacttgattaaacatgaagaaggaaaaaagagactgcacc |
106 |
Q |
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| T |
43493838 |
gtagcatggtaaaaccatatatatttattttccacaactttctgcttttgtggtaaacttgacttgattaaacatgaagaaggaaaaaagagactgcacc |
43493937 |
T |
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| Q |
107 |
tcacacgagccttcctccacaaacgttaacttttcatttcacgagaagttcaaaaagcataaggttataaagccatttagtactttcaatggagctatca |
206 |
Q |
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| T |
43493938 |
tcacacgagccttcctccacaaacgttaacttttcatttcacgagaagttcaaaaagcataaggttataaagccatttagtactttcaatggagctatca |
43494037 |
T |
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| Q |
207 |
actaaataaagttgaagtcatgctgtaaaagatactatgaattgaactagggtaggggggctcaaaggctgaaacata |
284 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43494038 |
actaaataaagttgaagtcatgctgtaaaagatactatgaattgaactagggtaggggggctcaaaggctgaaacata |
43494115 |
T |
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