View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19555_high_45 (Length: 298)
Name: NF19555_high_45
Description: NF19555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19555_high_45 |
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Alignment Details
Target: chr3 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 20712917 - 20713198
Alignment:
| Q |
1 |
aagaagaagaaatttgggatgtagtgaaagaaagaccaaattacatatctgaagttcataagccaaaggagaagaaggaactatcttctcttccaattcc |
100 |
Q |
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| T |
20712917 |
aagaagaagaaatttgggatgtagtgaaagaaagaccaaattacatatctgaagttcataagccaaaggagaagaaggaactatcttctcttccaattcc |
20713016 |
T |
|
| Q |
101 |
aacagcttcaagaatgattccaattccaaggactagtagtggaagtagtagtgctaatttatctcatgaaaccatggcttttcagcaatcagcaccagtt |
200 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20713017 |
aacagctgcaagaatgattccaattccaaggactagtagtggaagtagtagtgctaatttatctcatgaaaccatggcttttcagcaatcagcaccagtt |
20713116 |
T |
|
| Q |
201 |
aacattcctgattggtcaaagatttatggtaataataataataaacaaaacaagagtactaagaaggtttctaggtataatg |
282 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20713117 |
aacattcctgattggtcaaagatttatggtaataataataataaacaaaacaagagtactaagaaggtttctaggtataatg |
20713198 |
T |
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