View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19555_high_47 (Length: 295)
Name: NF19555_high_47
Description: NF19555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19555_high_47 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 36572816 - 36572537
Alignment:
| Q |
1 |
agcatagggagcattttcatctgtgatcttccttcatttgcctccaagtccgaagctgtgaaatgatattgacacattattattcccttcatgctaaaat |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36572816 |
agcatcgggagcattttcatctgtgatcttccttcatttgcctccaagtccgaagctgtgaaatgatattgacacattattattcccttcatgctaaaat |
36572717 |
T |
|
| Q |
101 |
tcacgagccaaataaccacccatctgaaatgtcgtacaacaccatttaccactcttattcaaaacccaaaatcttcttcaacttccttaaacttcacgtt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36572716 |
tcacgagccaaataaccacccatctgaaatgtcgtacaacaccatttaccactcttattcaaaacccaaaatcttcttcaacttccttaaacttcacgtt |
36572617 |
T |
|
| Q |
201 |
cttaaaccacctcaaaaaccaaaaactagactcagcacgtgccgtcttcaacaaaatcccttcccctcacgtgtcactct |
280 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36572616 |
cttaaaccacctcaaaaaccaaaaactagactcagcacgtgccgtcttcaacaaaatcccttcccctcacgtgtcactct |
36572537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University