View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19555_high_5 (Length: 630)
Name: NF19555_high_5
Description: NF19555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19555_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 323; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 247 - 628
Target Start/End: Complemental strand, 14195893 - 14195511
Alignment:
| Q |
247 |
aaaaaatttgattagttggtctttctttatcctattcaaaacttaaac-ttgaataccccaaccaacaacaacaatatccataacattcttatttataca |
345 |
Q |
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| T |
14195893 |
aaaaaaattgattagttggtctttcttcatcctattcaaaacttaaaagttgaataccccaaccaacaacaaaaatatccataagattcttatttatacg |
14195794 |
T |
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| Q |
346 |
atcaacttttgatttaattcataacatagaaccttataatgatgaatagccttatctggctcccaaaaaacccaacattccaacctggatgggacctaga |
445 |
Q |
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| T |
14195793 |
atcaacttttgatttaattcacaacatagaaccatataatgatgaatagccttatctggctcccaaaaaacccaacattccaacctggatgggacctaga |
14195694 |
T |
|
| Q |
446 |
agaaattcatgccacatttttcaaatgcataagttggcaaatggaagaaacaatggatgcaatcaattgtccttaccattatgtatgtgacaaaacatac |
545 |
Q |
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| T |
14195693 |
agaaattcatgccacatttttcaaatgcataagttggcaaatggaagaaacaatggatgcaatcaattgcccttaccattatgtatgtgacaaaacttac |
14195594 |
T |
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| Q |
546 |
cctccaaattatcatctttccattgatatcttagtccttctcttcacaacaatttcttatcttttgactcttatcattttgat |
628 |
Q |
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| T |
14195593 |
cctccaaattatcatctttccattgatatcttagtccttctcttcacaacaatttcttattttttgactcttttcattgtgat |
14195511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 392 - 628
Target Start/End: Complemental strand, 14182587 - 14182352
Alignment:
| Q |
392 |
tagccttatctggctcccaaaaaacccaacattccaacctggatgggacctagaagaaattcatgccacatttttcaaatgcataagttggcaaatggaa |
491 |
Q |
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| T |
14182587 |
tagccttatctagctcccaaaaaacccgacattccaacctggatgggacctagaagaaattcatgccacatttttcaaatgcataagttggcaaatgcaa |
14182488 |
T |
|
| Q |
492 |
gaaacaatggatgcaatcaattgtccttaccattatgtatgtgacaaaacataccctccaaattatcatctttccattgatatcttagtccttctcttca |
591 |
Q |
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| T |
14182487 |
gaaacaaaggatacaatcaattgcccttaccattatgtatgtgacaaaacttaccctccaaattatcatctttcaattgatatcttagtcc-tctcttca |
14182389 |
T |
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| Q |
592 |
caacaatttcttatcttttgactcttatcattttgat |
628 |
Q |
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| T |
14182388 |
caacaatttcttattttttgactcttttcattttgat |
14182352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 61
Target Start/End: Complemental strand, 14182782 - 14182737
Alignment:
| Q |
16 |
cacaatgttgttttaatgccaccaaattcatttacatatctagaat |
61 |
Q |
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| T |
14182782 |
cacaatgttgttttaatgccaccaaattcatttacatatatagaat |
14182737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 61
Target Start/End: Complemental strand, 14196264 - 14196219
Alignment:
| Q |
16 |
cacaatgttgttttaatgccaccaaattcatttacatatctagaat |
61 |
Q |
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| T |
14196264 |
cacaatgttgttttagtgccaccaaattcatttacatatctagaat |
14196219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 137 - 201
Target Start/End: Complemental strand, 14196135 - 14196071
Alignment:
| Q |
137 |
gaagataaataaaatctgactaattatggttctgatttaaattcggattcttctaaacgattttt |
201 |
Q |
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|||||||| |||||| |||||| ||||||||||||| || |||||||||||| |||||||||| |
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| T |
14196135 |
gaagataaggaaaatccgactaaatatggttctgattcgaactcggattcttctgaacgattttt |
14196071 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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