View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19555_high_54 (Length: 283)
Name: NF19555_high_54
Description: NF19555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19555_high_54 |
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Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 37231704 - 37231424
Alignment:
| Q |
1 |
aaaccaattgtgaaatttcgctacgactcattagaggaatacttttgttagaatagatatatagatagatgttttgcatagtcatgaatatataatttcc |
100 |
Q |
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| T |
37231704 |
aaaccaattgtgaaatttcgctacgactcattagaggaatacttttgttagaatagatatatagatagatgttttgcatagtcatgaatatataatttcc |
37231605 |
T |
|
| Q |
101 |
attcattggtaaactaaactattattctctat-------------ttgcagttaaagtgtttaagctataagcccttaattaagttgtttgtccaaacat |
187 |
Q |
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| T |
37231604 |
attcattggtaaactaaactattattctcaatgtttatgcgaattttgcagttaaagtgtttaagctataagcccttaattaagttgtttgtccaaacat |
37231505 |
T |
|
| Q |
188 |
ggacataatattcaaatggtttgcctggttaatctaatgcaacctctaatcataacagtagtaagggatgttagttcatac |
268 |
Q |
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| T |
37231504 |
ggacataatattcaaatggtttgcctggttaatctaatgcaacctctaatcataacagtagtaagggatgttagttcatac |
37231424 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 198
Target Start/End: Original strand, 14340948 - 14341004
Alignment:
| Q |
142 |
aagtgtttaagctataagcccttaattaagttgtttgtccaaacatggacataatat |
198 |
Q |
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| T |
14340948 |
aagtgtttatgttataagcacttaattaagttgtttatccaaacatgttcataatat |
14341004 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 189
Target Start/End: Original strand, 6875627 - 6875673
Alignment:
| Q |
143 |
agtgtttaagctataagcccttaattaagttgtttgtccaaacatgg |
189 |
Q |
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| T |
6875627 |
agtgtttaagctataagtgcttaattaagtggtttatccaaacatgg |
6875673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 152 - 184
Target Start/End: Complemental strand, 12972771 - 12972739
Alignment:
| Q |
152 |
gctataagcccttaattaagttgtttgtccaaa |
184 |
Q |
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| T |
12972771 |
gctataagcgcttaattaagttgtttgtccaaa |
12972739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 186
Target Start/End: Original strand, 39257535 - 39257575
Alignment:
| Q |
146 |
gtttaagctataagcccttaattaagttgtttgtccaaaca |
186 |
Q |
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| T |
39257535 |
gtttatgctataagcgcttaattaagttgtttatccaaaca |
39257575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 186
Target Start/End: Complemental strand, 42974277 - 42974233
Alignment:
| Q |
142 |
aagtgtttaagctataagcccttaattaagttgtttgtccaaaca |
186 |
Q |
| |
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||||||||| ||||||||| ||||||||||||| || |||||||| |
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| T |
42974277 |
aagtgtttatgctataagctcttaattaagttgcttatccaaaca |
42974233 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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