View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19555_high_55 (Length: 280)
Name: NF19555_high_55
Description: NF19555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19555_high_55 |
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Alignment Details
Target: chr7 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 19 - 270
Target Start/End: Complemental strand, 31822873 - 31822639
Alignment:
| Q |
19 |
tttactccaagagaatggatgtaacatccaaagtttttaacattttcatttaactcttttaagttagttgtgttaattattatatgctaagatgtttgga |
118 |
Q |
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| T |
31822873 |
tttactctaagagaatggatgtaacatccaaagtttttaacattttcattgaactcttttaagttagttgtgttaattattatatgctaagatgtttgga |
31822774 |
T |
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| Q |
119 |
catcaattatgggataattaggatagacttgataatgtttttataaatagaaattgattttaatttcttgaatctggccgcaccttgattatttgaattc |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
31822773 |
catcaattatgggataattaggatagacttgataatgtttttataaatagaaattgattttaatttc-----------------ttgattatttgaattc |
31822691 |
T |
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| Q |
219 |
ttgttagaaccttcaaaaaatttccttctttttccacatcttttttcctttg |
270 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31822690 |
ttgttagaaccttcaaaaaatttccttctttttccacatcttttttcctttg |
31822639 |
T |
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