View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19555_high_59 (Length: 259)
Name: NF19555_high_59
Description: NF19555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19555_high_59 |
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Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 28319586 - 28319335
Alignment:
| Q |
1 |
gtctttgatgttcttagctaagatcatagttgacctgaccagagaccttaagtactaaagaaatnnnnnnnnnnnnntatatgcagaaagaaatttctta |
100 |
Q |
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| T |
28319586 |
gtctttgatgttcttagctaagatcatagttgacctgaccacagaccttaagtactaaagaaataaaaataaaaaaatatatgcagaaagaaatttctta |
28319487 |
T |
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| Q |
101 |
gtttactttcacatagtacattagattcaagagtgaatttttctttggaatagtagagctatat--ggagaaacatagcttgctaagttgaaagcatggc |
198 |
Q |
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| T |
28319486 |
gtctactttcacatagtacattagattcaagggtgaatttttctttggaatagtagagctatatatggagaaacatagcttgctaagttgaaagcatggc |
28319387 |
T |
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| Q |
199 |
atatgcatatacaggtttcacactttggttaggatgacttttttggcatatt |
250 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28319386 |
atatgcatatacaggtttcacactttggttaggatgacttttttggcatatt |
28319335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 161
Target Start/End: Complemental strand, 50910839 - 50910795
Alignment:
| Q |
117 |
tacattagattcaagagtgaatttttctttggaatagtagagcta |
161 |
Q |
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||||||| || |||| ||||||||||||||||||||||| ||||| |
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| T |
50910839 |
tacattaaatgcaagggtgaatttttctttggaatagtaaagcta |
50910795 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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