View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19555_high_61 (Length: 255)

Name: NF19555_high_61
Description: NF19555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19555_high_61
NF19555_high_61
[»] chr4 (5 HSPs)
chr4 (17-223)||(37232603-37232809)
chr4 (98-223)||(37252930-37253058)
chr4 (107-187)||(37244881-37244961)
chr4 (102-180)||(37257059-37257137)
chr4 (105-180)||(37237606-37237681)
[»] chr6 (3 HSPs)
chr6 (86-185)||(14316667-14316766)
chr6 (101-187)||(14253954-14254040)
chr6 (86-180)||(14248129-14248223)
[»] scaffold1652 (1 HSPs)
scaffold1652 (86-175)||(595-684)
[»] scaffold0902 (1 HSPs)
scaffold0902 (86-178)||(3185-3277)
[»] scaffold1176 (1 HSPs)
scaffold1176 (101-180)||(371-450)
[»] scaffold1801 (1 HSPs)
scaffold1801 (109-179)||(268-338)


Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 17 - 223
Target Start/End: Original strand, 37232603 - 37232809
Alignment:
Q  17 gaaacagggcaacaacaaaaaggaaaatagttctcacgatcagtgtaaattcgtgataagaaaaagaacaaaataaactaagagtaactctctacatcat 116  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  37232603 gaaacagggcaacaacaaaaaggaaaatagttctcacgatctgtgtaaattcgtgataagaaaaagaacataataaactaagagtaactctctacatcat 37232702  T
Q  117 caaagcggcagcgaaaatcacaacagcagcagatccggcaacggtgaatctattcaaagcggcgccgtttgatggtgcttcagcaggaggagtggagatc 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37232703 caaagcggcagcgaaaatcacaacagcagcagatccggcaacggtgaatctattcaaagcggcgccgtttgatggtgcttcagcaggaggagtggagatc 37232802  T
Q  217 gatgatg 223  Q
    |||||||    
T  37232803 gatgatg 37232809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 98 - 223
Target Start/End: Original strand, 37252930 - 37253058
Alignment:
Q  98 gagtaactctctacatcatcaaagcggcagcgaaaatcacaacagcagcagatccggcaacggtgaatctattcaaagcggcgccgttt---gatggtgc 194  Q
    ||||||||||||| |  ||||||||||| ||||||| ||| ||||||||||||||||||||||| ||||| ||||||||||| ||||||   || ||| |    
T  37252930 gagtaactctctatagtatcaaagcggcggcgaaaaccactacagcagcagatccggcaacggtaaatctgttcaaagcggcaccgttttcggaaggtcc 37253029  T
Q  195 ttcagcaggaggagtggagatcgatgatg 223  Q
    ||| | |||||||||||| || |||||||    
T  37253030 ttcggaaggaggagtggaaatggatgatg 37253058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 107 - 187
Target Start/End: Original strand, 37244881 - 37244961
Alignment:
Q  107 tctacatcatcaaagcggcagcgaaaatcacaacagcagcagatccggcaacggtgaatctattcaaagcggcgccgtttg 187  Q
    |||| ||||||||| | |||||||||| |||||||||||||||||||||||| |||||||| || ||||||||||||||||    
T  37244881 tctatatcatcaaaacagcagcgaaaaccacaacagcagcagatccggcaacagtgaatctgttgaaagcggcgccgtttg 37244961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 102 - 180
Target Start/End: Original strand, 37257059 - 37257137
Alignment:
Q  102 aactctctacatcatcaaagcggcagcgaaaatcacaacagcagcagatccggcaacggtgaatctattcaaagcggcg 180  Q
    ||||||||||||||||||||| || ||||||| || ||||||||||||||| |||||||||||||| || |||||||||    
T  37257059 aactctctacatcatcaaagcagcggcgaaaaccataacagcagcagatccagcaacggtgaatctgttaaaagcggcg 37257137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 105 - 180
Target Start/End: Original strand, 37237606 - 37237681
Alignment:
Q  105 tctctacatcatcaaagcggcagcgaaaatcacaacagcagcagatccggcaacggtgaatctattcaaagcggcg 180  Q
    |||||||||||||||||| ||||| ||||  ||| ||||||||||| |||||| ||||||||| ||||| ||||||    
T  37237606 tctctacatcatcaaagctgcagcaaaaacaacagcagcagcagatacggcaaaggtgaatctgttcaatgcggcg 37237681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 86 - 185
Target Start/End: Original strand, 14316667 - 14316766
Alignment:
Q  86 aaaataaactaagagtaactctctacatcatcaaagcggcagcgaaaatcacaacagcagcagatccggcaacggtgaatctattcaaagcggcgccgtt 185  Q
    |||| ||||||||  |||||||||||||||||||||| |||||||||| ||| ||||||||||||||||||| ||| ||||| |||||||||||| ||||    
T  14316667 aaaaaaaactaagcctaactctctacatcatcaaagcagcagcgaaaaccacgacagcagcagatccggcaagggtaaatctgttcaaagcggcgtcgtt 14316766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 101 - 187
Target Start/End: Original strand, 14253954 - 14254040
Alignment:
Q  101 taactctctacatcatcaaagcggcagcgaaaatcacaacagcagcagatccggcaacggtgaatctattcaaagcggcgccgtttg 187  Q
    |||||||||||||||||||||| |||||||||| ||| |||||||||||||| ||||| || ||||| |||||||||||| ||||||    
T  14253954 taactctctacatcatcaaagcagcagcgaaaaccacgacagcagcagatccagcaactgtaaatctgttcaaagcggcgtcgtttg 14254040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 86 - 180
Target Start/End: Original strand, 14248129 - 14248223
Alignment:
Q  86 aaaataaactaagagtaactctctacatcatcaaagcggcagcgaaaatcacaacagcagcagatccggcaacggtgaatctattcaaagcggcg 180  Q
    |||| ||||||||  |||||||||||||||||||||| ||| | |||| ||| ||||||| |||||||||||| || ||||| ||||||||||||    
T  14248129 aaaaaaaactaagcctaactctctacatcatcaaagcagcaacaaaaaccacgacagcagtagatccggcaactgtaaatctgttcaaagcggcg 14248223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1652 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold1652
Description:

Target: scaffold1652; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 86 - 175
Target Start/End: Complemental strand, 684 - 595
Alignment:
Q  86 aaaataaactaagagtaactctctacatcatcaaagcggcagcgaaaatcacaacagcagcagatccggcaacggtgaatctattcaaag 175  Q
    ||||||||||  | ||||||||||||||||||||||| |||| ||||| ||| |||||||||||||||||||| || ||||| |||||||    
T  684 aaaataaactctgcgtaactctctacatcatcaaagcagcagtgaaaaccacgacagcagcagatccggcaactgtaaatctgttcaaag 595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0902 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0902
Description:

Target: scaffold0902; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 86 - 178
Target Start/End: Original strand, 3185 - 3277
Alignment:
Q  86 aaaataaactaagagtaactctctacatcatcaaagcggcagcgaaaatcacaacagcagcagatccggcaacggtgaatctattcaaagcgg 178  Q
    |||||||||| ||  |||||||||||||||||||||| || | ||||| ||| |||||||||||||||||||| || ||||| ||||||||||    
T  3185 aaaataaactcagcctaactctctacatcatcaaagcagccgtgaaaaccacgacagcagcagatccggcaactgtaaatctgttcaaagcgg 3277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1176 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold1176
Description:

Target: scaffold1176; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 101 - 180
Target Start/End: Complemental strand, 450 - 371
Alignment:
Q  101 taactctctacatcatcaaagcggcagcgaaaatcacaacagcagcagatccggcaacggtgaatctattcaaagcggcg 180  Q
    |||||||||||||||||||||| |||  ||||| ||| ||||||| |||||||||||| || ||||| ||||||||||||    
T  450 taactctctacatcatcaaagcagcaatgaaaaccacgacagcagtagatccggcaactgtaaatctgttcaaagcggcg 371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1801 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold1801
Description:

Target: scaffold1801; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 109 - 179
Target Start/End: Complemental strand, 338 - 268
Alignment:
Q  109 tacatcatcaaagcggcagcgaaaatcacaacagcagcagatccggcaacggtgaatctattcaaagcggc 179  Q
    |||||||||||||| ||||  ||||  || |||||||||||||||||||| || ||||| |||||||||||    
T  338 tacatcatcaaagcagcagttaaaaggacgacagcagcagatccggcaactgtaaatctgttcaaagcggc 268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University