View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19555_high_68 (Length: 233)
Name: NF19555_high_68
Description: NF19555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19555_high_68 |
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Alignment Details
Target: chr1 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 8 - 225
Target Start/End: Original strand, 34604757 - 34604974
Alignment:
| Q |
8 |
atatttgatatttttcacacatcatccattctctattcacattgaggtaaaaaatttcttctctcgtcgtcgattctttctgcattctggatcactccat |
107 |
Q |
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| T |
34604757 |
atatttgatatttttcacacatcatccattctctattcacattgaggtaaaatctttcttctctcgtcgtcgattctttctgcattctggatcactccat |
34604856 |
T |
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| Q |
108 |
annnnnnnnatggcggaaatcgaggatgcaacataagaacaacacaatatagctaacaaaaatcaaacacatttatattacgtatagcaccgtttaataa |
207 |
Q |
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| T |
34604857 |
attttttttatggcggaaattgaggatgcaacataagaacaacacaatatagctaacaaaaatcaaacacatttatattacgtatagcaccgtttaataa |
34604956 |
T |
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| Q |
208 |
agtttgagtaagtataat |
225 |
Q |
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| T |
34604957 |
agtttgagtaagtataat |
34604974 |
T |
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