View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19555_high_7 (Length: 576)
Name: NF19555_high_7
Description: NF19555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19555_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 11 - 284
Target Start/End: Original strand, 421112 - 421379
Alignment:
| Q |
11 |
atgaaattaaaatcacgttgcaacaagaagaatgagattattagaagtaaaatatataaaagtcattctttatttttggaggtgtaaatagcaataagat |
110 |
Q |
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| T |
421112 |
atgaaattaaaatcacgttgtaacaagaagaatgagattattagaagtaaaatatataaaagtcattctttatttttggaggtgtaaatagcaataagat |
421211 |
T |
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| Q |
111 |
agccctaacctaatttgctgaaaagttatggttgggnnnnnnnnnnnnctttatctatccatccatctatctaactcatttcatttgattcagagaaaac |
210 |
Q |
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| T |
421212 |
agccctaacctaatttgctgaaaagttatggttggg----gagagagactttatctatccatccatctatctaactcatttcatttgattcagagaaaac |
421307 |
T |
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| Q |
211 |
agtgtgtaatgtaatggcgtgtacattaagtctattatcacacacactctctctctcactatcactataactat |
284 |
Q |
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| T |
421308 |
agtgtgtaatgtaatggcgtgtacattaagtctattatcacacaca--ctctctctcactataactataactat |
421379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 345 - 562
Target Start/End: Original strand, 421436 - 421654
Alignment:
| Q |
345 |
gctatgctaaatgggttgtgcgcttaaaagatctcactttcaccctaaaaaagctgaacacttttgtctccatctcctcatctctctctaccaataggaa |
444 |
Q |
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| T |
421436 |
gctatgctaaatgggttgtgcgcttaaaagatctcactttcaccctaaaaaagctgaacacttttgtctccatctcctcatctctctctaccaataggaa |
421535 |
T |
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| Q |
445 |
agttactcttgtaactcaatttctcat--nnnnnnnnnnnnnnnagttgagttaagtttgtgtgagtttgagggaaattcagcttatgaggcggcttctg |
542 |
Q |
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| T |
421536 |
agttactcttgtaactcaa-ttctcattctctctctctctctctagttgagttaagtttgtgtgagtttgagggaaattcagcttatgaggcggcttctg |
421634 |
T |
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| Q |
543 |
cagacagtgggtaattggtg |
562 |
Q |
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| T |
421635 |
cagacagtgggtaattggtg |
421654 |
T |
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