View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19555_high_70 (Length: 226)
Name: NF19555_high_70
Description: NF19555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19555_high_70 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 9 - 226
Target Start/End: Original strand, 44154017 - 44154234
Alignment:
| Q |
9 |
atacctttgattttccagtttgaaatgtcgtagtcgtcaaaatcttcttcattaactgtaaatgcatccatcaataacaattaccagacacattctaaac |
108 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
44154017 |
atacctttgattttccagtttgaaatgtcgtagtcgtcaaaatcttcttcattttctgtaaatgcatcaatcaataacaattaccagacacattctaaac |
44154116 |
T |
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| Q |
109 |
acatgaagaaacatccttaaatcagaaaaaacaataataccaaattcttcatcccgctcatcatagttgtcctcaaattgttcttcttttgttttttctg |
208 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44154117 |
acatgaagaaacatccttaaatcagaaaaaacagtaataccaaattcttcatcccgctcatcatagttgtcctcaaattgttcttcttttgttttttctg |
44154216 |
T |
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| Q |
209 |
catcgatcaataataata |
226 |
Q |
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|||||||||||||||||| |
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| T |
44154217 |
catcgatcaataataata |
44154234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 9 - 226
Target Start/End: Original strand, 40898742 - 40898959
Alignment:
| Q |
9 |
atacctttgattttccagtttgaaatgtcgtagtcgtcaaaatcttcttcattaactgtaaatgcatccatcaataacaattaccagacacattctaaac |
108 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| ||| |||||||| |||||||||||||||||||||| |
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| T |
40898742 |
atacctttgattttccagtatgaaatgtcgtagtcgtcaaaatcttcttcattttctgtaaatgtatcaatcaataataattaccagacacattctaaac |
40898841 |
T |
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| Q |
109 |
acatgaagaaacatccttaaatcagaaaaaacaataataccaaattcttcatcccgctcatcatagttgtcctcaaattgttcttcttttgttttttctg |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
40898842 |
acatgaagaaacatccttaaatcagaaaaaacaataataccaaattcttcatcccgctcatcatagctgtcctcaaattgttcttcttttgttttttctg |
40898941 |
T |
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| Q |
209 |
catcgatcaataataata |
226 |
Q |
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|||||||||||||||||| |
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| T |
40898942 |
catcgatcaataataata |
40898959 |
T |
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Back To:
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