View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19555_high_8 (Length: 547)
Name: NF19555_high_8
Description: NF19555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19555_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 426; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 101 - 538
Target Start/End: Original strand, 37572119 - 37572556
Alignment:
| Q |
101 |
gtaatcaatcagtgaaagaaagtttttgaagaaccatgttcagaaaaattctcttgttgttgtctcttttctgataatttcttcagcagagagaattgtt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
37572119 |
gtaatcaatcagtgaaagaaagtttttgaagaaccatgttcagaaaaattctcttgttgttgtcttttttctgataatttcttcagcagagagaattgtt |
37572218 |
T |
|
| Q |
201 |
ccatggagaaaacacagtaacctcgttcacaaagctttgtttgtgcaaccggtgagttcaccagaatctgcaaagcttggtttcttttcagcttctccaa |
300 |
Q |
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| T |
37572219 |
ccatggagaaaacacagtaacctcgttcacaaagctttgtttgtgcaaccggtgagttcaccagaatctgcaaagcttggtttcttttcagcttctccaa |
37572318 |
T |
|
| Q |
301 |
gtcatcaaaaacaccaccagaagcagtagttccaccaccgccgtagccgacaccgtaagaaggcattgattgaagaacagataactgtgcctgcaaaaac |
400 |
Q |
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| T |
37572319 |
gtcatcaaaaacaccaccagaagcagtagttccaccaccgccgtagccgacaccgtaagaaggcattgattgaagaacagataactgtgcctgcaaaaac |
37572418 |
T |
|
| Q |
401 |
ttaacatatttgtaagcttcttcataaagagtagcttgatccattctcttgtcccatggcattagtttctgaagacagcgtgttttctcgcttagttttt |
500 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37572419 |
ttaacgtatttgtaagcttcttcataaagagtagcttgatccattctcttgtcccatggcattagtttctgaagacagcgtgttttctcgcttagttttt |
37572518 |
T |
|
| Q |
501 |
gtcttctttgtcttgctaaattgctttgtggaatcaaa |
538 |
Q |
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| T |
37572519 |
gtcttctttgtcttgctaagttgctttgtggaatcaaa |
37572556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 37572019 - 37572093
Alignment:
| Q |
1 |
tcgcttgacagaagcaggtcgagagggcactaagnnnnnnngggttaaacttgaacgaacacgagaaacggtgtc |
75 |
Q |
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||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |||||||||||| |
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| T |
37572019 |
tcgcttgacagaagcaggtcgagagagcactaagcaaaaaagggttaaacttgaacgaacacaagaaacggtgtc |
37572093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 101; Significance: 8e-50; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 113 - 317
Target Start/End: Complemental strand, 37221327 - 37221120
Alignment:
| Q |
113 |
tgaaagaaagtttttgaagaaccatgttcagaaaaattctcttgttgttgtc-tcttttct--gataatttcttcagcagagagaattgttccatggaga |
209 |
Q |
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||||| ||| ||||||||||| ||| |||||||||| | |||||||||| |||||||| |||||||| | |||| |||||||||||||||||||| |
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| T |
37221327 |
tgaaataaattttttgaagaatgatgaccagaaaaattatgttgttgttgttgtcttttctatgataattttctgagcaaagagaattgttccatggaga |
37221228 |
T |
|
| Q |
210 |
aaacacagtaacctcgttcacaaagctttgtttgtgcaaccggtgagttcaccagaatctgcaaagcttggtttcttttcagcttctccaagtcatcaaa |
309 |
Q |
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| T |
37221227 |
aaacacaataacattgttcacaaagctttgtttttgcaactggtgagttcaccaaaatctgtaatgcttggtttctgttcagcttctccaagtcatcaaa |
37221128 |
T |
|
| Q |
310 |
aacaccac |
317 |
Q |
| |
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|||||||| |
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| T |
37221127 |
aacaccac |
37221120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 453 - 527
Target Start/End: Complemental strand, 37221093 - 37221019
Alignment:
| Q |
453 |
cccatggcattagtttctgaagacagcgtgttttctcgcttagtttttgtcttctttgtcttgctaaattgcttt |
527 |
Q |
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||||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||| |||| ||||||| |
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| T |
37221093 |
cccatggcattagtttctgaagacaacatgttttctcgcttagattttgtcttctttgtctttctaagttgcttt |
37221019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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