View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19555_low_1 (Length: 1028)

Name: NF19555_low_1
Description: NF19555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19555_low_1
NF19555_low_1
[»] chr6 (16 HSPs)
chr6 (49-611)||(1898405-1898966)
chr6 (425-620)||(1903985-1904181)
chr6 (425-620)||(1908218-1908414)
chr6 (670-827)||(1899070-1899227)
chr6 (478-611)||(1888271-1888404)
chr6 (477-613)||(1914150-1914285)
chr6 (481-596)||(1893124-1893239)
chr6 (420-597)||(1880913-1881090)
chr6 (134-302)||(1903702-1903876)
chr6 (134-302)||(1907935-1908109)
chr6 (719-768)||(1904309-1904358)
chr6 (719-768)||(1908542-1908591)
chr6 (948-991)||(1904970-1905014)
chr6 (948-991)||(1909203-1909247)
chr6 (917-948)||(1899493-1899524)
chr6 (505-580)||(1919164-1919239)


Alignment Details
Target: chr6 (Bit Score: 499; Significance: 0; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 49 - 611
Target Start/End: Original strand, 1898405 - 1898966
Alignment:
Q  49 caattatctggttaaccacgactttgaacttcgtcaacctctactatagtgttcaaatataaatagactgattaactatttaaattgtgttcaaatataa 148  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  1898405 caattatctggttaaccacgactttgaacttcgtcaacctctactatagtgttcaaatataaatagaccgattaactatttaaattgtgttcaaatataa 1898504  T
Q  149 atggtattcattaatcataatttaagttcctatatacccttgtaaaccgaagttaacaaatttgtggttaattgcgtttgagtgaacgattaataagttg 248  Q
    ||||||||||||||||||| |||||||||| ||||||  ||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||    
T  1898505 atggtattcattaatcatagtttaagttccaatatacttttgtaaaccgaagttaacaaatttgtggttaattgggtt-gagtgaacgattaataagatg 1898603  T
Q  249 caacacttgataaagcagtcacgggacgtaatgaagcacatatttgaattgtgttaaccatcttagtagttttatgcttttgatgtcaaattatttgttg 348  Q
    | |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  1898604 cgacacttgataaatcagtcacgggacgtaattaagcacatatttgaattgtgttaaccatcttagtagttttatgcttttgatgtcaaattgtttgttg 1898703  T
Q  349 aaactggaaatatcatttataagatatttaaacctcttaaggttgtgtacttcattgatgacacgtctctttttctaggctatttttggaaagtttatag 448  Q
    ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1898704 aaacttgaaatatcatttataaaatatttaaacctcttaaggttgtgtacttcattgatgacacgtctctttttctaggctatttttggaaagtttatag 1898803  T
Q  449 gcattgcagtttgtgcttggacagttcgcttaaagggggcagtctatgtaacctcattcaagccacttcaaattgttatttctgctggcttaggtgttat 548  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1898804 gcattgcagtttgtgcttggacagttcgcttaaagggggcagtctatgtaacctcattcaagccacttcaaattgttatttctgctggcttaggtgttat 1898903  T
Q  549 gttccttggtgatactcttcatgttggaaggtatagtaaattcaatttttgcatttgattctt 611  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1898904 gtttcttggtgatactcttcatgttggaaggtatagtaaattcaatttttgcatttgattctt 1898966  T

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Target: chr6; HSP #2
Raw Score: 125; E-Value: 8e-64
Query Start/End: Original strand, 425 - 620
Target Start/End: Original strand, 1903985 - 1904181
Alignment:
Q  425 aggctatttttggaaagtttataggcattgcagtttgtgcttggacagttcgcttaaagggggcagtctatgtaacctcattcaagccacttcaaattgt 524  Q
    |||| ||||| |||||||| ||||||| | |||||||||| ||| | ||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  1903985 aggcaattttcggaaagttgataggcaatacagtttgtgcctggtctgttcggttaaagggggcagtctatgtaacctcattcaagccacttcaaattgt 1904084  T
Q  525 tatttctgctggcttaggtgttatgttccttggtgatactcttcatgttggaaggtatagtaaattcaa-tttttgcatttgattctttgcttgaaa 620  Q
    ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| || | || || ||||||| |||||||||||||||||||    
T  1904085 tatttctgctggcttgggtgttatattccttggtgatactcttcatgttggaaggtatggttatttgaattttttgcttttgattctttgcttgaaa 1904181  T

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Target: chr6; HSP #3
Raw Score: 125; E-Value: 8e-64
Query Start/End: Original strand, 425 - 620
Target Start/End: Original strand, 1908218 - 1908414
Alignment:
Q  425 aggctatttttggaaagtttataggcattgcagtttgtgcttggacagttcgcttaaagggggcagtctatgtaacctcattcaagccacttcaaattgt 524  Q
    |||| ||||| |||||||| ||||||| | |||||||||| ||| | ||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  1908218 aggcaattttcggaaagttgataggcaatacagtttgtgcctggtctgttcggttaaagggggcagtctatgtaacctcattcaagccacttcaaattgt 1908317  T
Q  525 tatttctgctggcttaggtgttatgttccttggtgatactcttcatgttggaaggtatagtaaattcaa-tttttgcatttgattctttgcttgaaa 620  Q
    ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| || | || || ||||||| |||||||||||||||||||    
T  1908318 tatttctgctggcttgggtgttatattccttggtgatactcttcatgttggaaggtatggttatttgaattttttgcttttgattctttgcttgaaa 1908414  T

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Target: chr6; HSP #4
Raw Score: 113; E-Value: 1e-56
Query Start/End: Original strand, 670 - 827
Target Start/End: Original strand, 1899070 - 1899227
Alignment:
Q  670 caacaatttgataaaactcaacagaactgttaatggttcgttccaaaccgtttagtgcaccgattatgtggttttctaccgagctgaaaatacctttacn 769  Q
    |||||||| ||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||     
T  1899070 caacaattcgataaaattcaactgaattgttaatggttcgttccaaaccgtttagtgcaccgattatgtggttttcaaccgagctgaaaatacctttaca 1899169  T
Q  770 nnnnnnccgaactgattctttttggaatcaaactggaaatacctttaacaaaaaccgt 827  Q
          |||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  1899170 aaaaaaccgaactgattctttttggaatcaaacttgaaatacctttaacaaaaaccgt 1899227  T

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Target: chr6; HSP #5
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 478 - 611
Target Start/End: Original strand, 1888271 - 1888404
Alignment:
Q  478 ttaaagggggcagtctatgtaacctcattcaagccacttcaaattgttatttctgctggcttaggtgttatgttccttggtgatactcttcatgttggaa 577  Q
    |||||||| || ||||||||||| |||||||||||||| |||||||||||||||| || |||  ||||||| ||||||||||||||||||||||||||||    
T  1888271 ttaaagggagctgtctatgtaacatcattcaagccactccaaattgttatttctgttgccttgagtgttatattccttggtgatactcttcatgttggaa 1888370  T
Q  578 ggtatagtaaattcaatttttgcatttgattctt 611  Q
    |||||||| ||||||||||||| ||| |||||||    
T  1888371 ggtatagttaattcaatttttgaattggattctt 1888404  T

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Target: chr6; HSP #6
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 477 - 613
Target Start/End: Original strand, 1914150 - 1914285
Alignment:
Q  477 cttaaagggggcagtctatgtaacctcattcaagccacttcaaattgttatttctgctggcttaggtgttatgttccttggtgatactcttcatgttgga 576  Q
    |||||||||||| |||||||||||||||||||||||||| ||||||||||| |||| | | || || ||||| ||||||||||||||||||||| |||||    
T  1914150 cttaaagggggctgtctatgtaacctcattcaagccactgcaaattgttatctctgtttggttgggagttatattccttggtgatactcttcatcttgga 1914249  T
Q  577 aggtatagtaaattcaatttttgcatttgattctttg 613  Q
    |||||| || ||||||| |||||||||||||||||||    
T  1914250 aggtatggttaattcaa-ttttgcatttgattctttg 1914285  T

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Target: chr6; HSP #7
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 481 - 596
Target Start/End: Original strand, 1893124 - 1893239
Alignment:
Q  481 aagggggcagtctatgtaacctcattcaagccacttcaaattgttatttctgctggcttaggtgttatgttccttggtgatactcttcatgttggaaggt 580  Q
    |||||||| ||||||||||||||||||||||| || |||||||||||||||| ||||||||| ||||| ||||||||||||| ||||||| |||||||||    
T  1893124 aagggggctgtctatgtaacctcattcaagcctctacaaattgttatttctgttggcttaggagttatattccttggtgatattcttcatattggaaggt 1893223  T
Q  581 atagtaaattcaattt 596  Q
    || || |||| |||||    
T  1893224 atggttaatttaattt 1893239  T

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Target: chr6; HSP #8
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 420 - 597
Target Start/End: Original strand, 1880913 - 1881090
Alignment:
Q  420 tttctaggctatttttggaaagtttataggcattgcagtttgtgcttggacagttcgcttaaagggggcagtctatgtaacctcattcaagccacttcaa 519  Q
    ||||||||  ||||||||||| || ||| ||| |  ||||| ||| ||| || | ||||||||||| || ||||||||||| |||||||||||||| |||    
T  1880913 tttctaggggatttttggaaaattaataagcagtatagtttatgcatggtcattgcgcttaaagggagctgtctatgtaacatcattcaagccactccaa 1881012  T
Q  520 attgttatttctgctggcttaggtgttatgttccttggtgatactcttcatgttggaaggtatagtaaattcaatttt 597  Q
    |||||  |||||| || ||| | |||||| ||||||||||||||||||||||||||||||||| ||  ||||||||||    
T  1881013 attgtgttttctgttgccttggctgttatattccttggtgatactcttcatgttggaaggtatggtttattcaatttt 1881090  T

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Target: chr6; HSP #9
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 134 - 302
Target Start/End: Original strand, 1903702 - 1903876
Alignment:
Q  134 tgtgttcaaatataaatggtattcattaatcataatttaagttcctatatacccttgtaaaccgaagttaa-------caaatttgtggttaattgcgtt 226  Q
    |||||||||||||||||| ||||||||||||||||||| |||||| |||||| |||| ||| |   |||||       |||||||||||||||||||  |    
T  1903702 tgtgttcaaatataaatgatattcattaatcataatttgagttccaatatacacttgaaaatcatggttaacgatattcaaatttgtggttaattgc-at 1903800  T
Q  227 tgagtgaacgattaataagttgcaacacttgataaagcagtcacgggacgtaatgaagcacatatttgaattgtgt 302  Q
     ||||| ||||| ||| |||||  |||||||| ||| ||||||| ||||||||| || ||| ||||||||||||||    
T  1903801 cgagtggacgatgaatgagttgtgacacttgacaaatcagtcactggacgtaattaaacacttatttgaattgtgt 1903876  T

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Target: chr6; HSP #10
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 134 - 302
Target Start/End: Original strand, 1907935 - 1908109
Alignment:
Q  134 tgtgttcaaatataaatggtattcattaatcataatttaagttcctatatacccttgtaaaccgaagttaa-------caaatttgtggttaattgcgtt 226  Q
    |||||||||||||||||| ||||||||||||||||||| |||||| |||||| |||| ||| |   |||||       |||||||||||||||||||  |    
T  1907935 tgtgttcaaatataaatgatattcattaatcataatttgagttccaatatacacttgaaaatcatggttaacgatattcaaatttgtggttaattgc-at 1908033  T
Q  227 tgagtgaacgattaataagttgcaacacttgataaagcagtcacgggacgtaatgaagcacatatttgaattgtgt 302  Q
     ||||| ||||| ||| |||||  |||||||| ||| ||||||| ||||||||| || ||| ||||||||||||||    
T  1908034 cgagtggacgatgaatgagttgtgacacttgacaaatcagtcactggacgtaattaaacacttatttgaattgtgt 1908109  T

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Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 719 - 768
Target Start/End: Original strand, 1904309 - 1904358
Alignment:
Q  719 gtttagtgcaccgattatgtggttttctaccgagctgaaaatacctttac 768  Q
    ||||||||||| ||| ||||||||||| ||||||||||||||||||||||    
T  1904309 gtttagtgcactgatcatgtggttttcaaccgagctgaaaatacctttac 1904358  T

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Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 719 - 768
Target Start/End: Original strand, 1908542 - 1908591
Alignment:
Q  719 gtttagtgcaccgattatgtggttttctaccgagctgaaaatacctttac 768  Q
    ||||||||||| ||| ||||||||||| ||||||||||||||||||||||    
T  1908542 gtttagtgcactgatcatgtggttttcaaccgagctgaaaatacctttac 1908591  T

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Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 948 - 991
Target Start/End: Original strand, 1904970 - 1905014
Alignment:
Q  948 ctcatttctgatta-aatgattgttaaagtgttcatttgtgtata 991  Q
    |||||||||||||  ||||||||||||||||||||||||||||||    
T  1904970 ctcatttctgatttcaatgattgttaaagtgttcatttgtgtata 1905014  T

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Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 948 - 991
Target Start/End: Original strand, 1909203 - 1909247
Alignment:
Q  948 ctcatttctgatta-aatgattgttaaagtgttcatttgtgtata 991  Q
    |||||||||||||  ||||||||||||||||||||||||||||||    
T  1909203 ctcatttctgatttcaatgattgttaaagtgttcatttgtgtata 1909247  T

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Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 917 - 948
Target Start/End: Original strand, 1899493 - 1899524
Alignment:
Q  917 aacttatttgagtttatctactagtataagtc 948  Q
    ||||||||||||||||||||||||||||||||    
T  1899493 aacttatttgagtttatctactagtataagtc 1899524  T

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Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 505 - 580
Target Start/End: Original strand, 1919164 - 1919239
Alignment:
Q  505 ttcaagccacttcaaattgttatttctgctggcttaggtgttatgttccttggtgatactcttcatgttggaaggt 580  Q
    ||||||||||||  |||||||||| ||| ||   | ||| || ||||||||||||||||||||||| |||||||||    
T  1919164 ttcaagccactttcaattgttattgctgttgctatgggtattttgttccttggtgatactcttcatattggaaggt 1919239  T

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