View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19555_low_11 (Length: 540)
Name: NF19555_low_11
Description: NF19555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19555_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 16 - 530
Target Start/End: Complemental strand, 38892901 - 38892391
Alignment:
| Q |
16 |
tacataacttgtcccactcccacaccaccacgctctcatctcatgtaaccaaaagaacacaaacaaaattttaacgccgtgagtgccgcagtcaaaactt |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38892901 |
tacataacttgtcccactcccacaccaccacgctctcat-----gtaaccaaaagaacacaaacaaaattttaacgccgtgagtgccgcagtcaaaactt |
38892807 |
T |
|
| Q |
116 |
aaaactaaagaacataggttcacnnnnnnnnnnnnnnnnnnnnngtgagtgtgacatatgcctcttgttattttgatccgtatgttttctttcccgatcg |
215 |
Q |
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||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
38892806 |
aaaactaaagaacataggttcacttttttactttgcccttttttgtgagtgtgacataagcctcttgttattttgatccgtatgttttctttcccgatcg |
38892707 |
T |
|
| Q |
216 |
atataatgcaatgagcaaaggttcactgttaaatctaatccattataagctaatatatttatccacacacacgtgtaatgttaaactagcaatgcaaatg |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38892706 |
atataatgcaatgagcaaaggttcactgttaaatctaatccattataagctaatatatttatccacacacacgtgtaatgttaaactagcaatgcaaatg |
38892607 |
T |
|
| Q |
316 |
tagaacagagaagagagacaagtgaaaagtgagatttcaaattgttggatttaagtttgagtgattagttctacatcaattatgaatagacaaaacgttg |
415 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
38892606 |
tagaacagagaagagagacaagtgaaaagtgagatttcaaattgttgggattaagtttgagtgattaattctacatcaattatgaatagacaaaacgttg |
38892507 |
T |
|
| Q |
416 |
aatatatatgagatgtgacatatataca-taatgttttaaggtttttagcgaagatatgatgtctccatcgcttataatcataggtaattggtttgttgt |
514 |
Q |
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|||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||| |
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| T |
38892506 |
aatatatatgagatgtgacatatacacattaatgttttaaggttttgagcgaagatatgatgtctccatcgcttataatcataggtaattggttcgctgt |
38892407 |
T |
|
| Q |
515 |
tgctttctgtgctcct |
530 |
Q |
| |
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||||||| |||||||| |
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| T |
38892406 |
tgctttccgtgctcct |
38892391 |
T |
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