View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19555_low_14 (Length: 495)
Name: NF19555_low_14
Description: NF19555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19555_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 217 - 479
Target Start/End: Original strand, 22215120 - 22215382
Alignment:
| Q |
217 |
taccatatggtaatccattagaagatgtaatggtcgatgttatcaaagggtgtcgtacagtttttaaagaaaaacctccacaaaagaaggaagatccagg |
316 |
Q |
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| T |
22215120 |
taccatatggtaatccattagaagatgtaatggtcgatgttatcaaagggtgtcgtacagtttttaaagaaaaacctccacaaaagaaggaagatccagg |
22215219 |
T |
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| Q |
317 |
atggtttaacatacctgttacgatcaaggatttatatctgggagaagtgatgtgcgacctcgtatcaggcgcaaacatgatgtcactgtcactttttaag |
416 |
Q |
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|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
22215220 |
atggtttaacatacctgttacgatcaaggaattttatctgggagaagtgatgtgcgacctcgtatcaagcgcaaacatgatgtcactgtcactttttaag |
22215319 |
T |
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| Q |
417 |
aaaatttgagggttagaacttaatccatgtgaaataagaatataacttgttattggttcaagc |
479 |
Q |
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| T |
22215320 |
aaaatttgagggttagaacttaatccatgtgaaataagaatatgacttgttattggttcaagc |
22215382 |
T |
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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 342 - 418
Target Start/End: Complemental strand, 26166977 - 26166902
Alignment:
| Q |
342 |
aaggatttatatctgggagaagtgatgtgcgacctcgtatcaggcgcaaacatgatgtcactgtcactttttaagaa |
418 |
Q |
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| T |
26166977 |
aaggatttttatttaggagaagtgatacgcgacctcagatcaagcgcaaacat-atgtcactgtcaatttttaagaa |
26166902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 360 - 412
Target Start/End: Complemental strand, 28923601 - 28923549
Alignment:
| Q |
360 |
gaagtgatgtgcgacctcgtatcaggcgcaaacatgatgtcactgtcactttt |
412 |
Q |
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| T |
28923601 |
gaagtaatgtgtgacctcgtatccagcgtaaacatgatgtcactatcactttt |
28923549 |
T |
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