View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19555_low_15 (Length: 480)
Name: NF19555_low_15
Description: NF19555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19555_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 430; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 19 - 472
Target Start/End: Original strand, 16510849 - 16511302
Alignment:
| Q |
19 |
gttaactctgctgcatatccactgcttacactgttaaatatgctagagattgagccatataggaaggtaatgaatctctatttttaaattgttttgctct |
118 |
Q |
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| T |
16510849 |
gttaactctgctgcatatccactgcttacactgttaaatatgctagagattgagccatataggaaggtaatgaatctctattttgaaattgttttgctct |
16510948 |
T |
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| Q |
119 |
gtatgtttgttaatgttgcatttgtaatgagtttgttatttctaactaggctgatttcacccctgaggaaatgaaggctcgcaagcgggtgcttaaagta |
218 |
Q |
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| T |
16510949 |
gtaggtttgttaatgttgcatttgtaatgagtttgttatttctaactaggctgatttcacccctgaggaaatgaaggctcgaaagcgggtgcttaaagta |
16511048 |
T |
|
| Q |
219 |
tgttcaactattttcattcttttttccctttttaatagtttgtagctttcatgatattgctgtttaaaattgtgtattgaatcgaatatcattattgtaa |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| |
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| T |
16511049 |
tgttcaactattttcattcttttttccctttttaatagtttgtagctttcatgatattgctgtttaaaattgtgtattgaattgaatgtcattattgtaa |
16511148 |
T |
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| Q |
319 |
atgtttctatattctttgttaagcaatatgtgcatattagaggactaatttttctgttcatattaccagcttgactcagatgaagtttcagtaattcctg |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16511149 |
atgtttctatattctttgttaagcaatatgtgcatattagaggactaatttttctgttcatattaccagcttgactcagatgaagtttcagtaattcctg |
16511248 |
T |
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| Q |
419 |
tcaataagcgaagaaaaggtgtcagtgagccacttccagcaacaactgatgatg |
472 |
Q |
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| T |
16511249 |
tcaataagcgaagaaaaggtgtcagtgagccacttccagcaacaactgaggatg |
16511302 |
T |
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