View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19555_low_16 (Length: 464)
Name: NF19555_low_16
Description: NF19555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19555_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 438; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 1 - 450
Target Start/End: Complemental strand, 32313585 - 32313136
Alignment:
| Q |
1 |
agtaaaacattatgactcacatcttgtagtagaaaacagtagcttcccctgtggtggaagaaggaatcagatgtttgtcaataatttcgagaatgtcgct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32313585 |
agtaaaacattatgactcacatcttgtagtagaaaacagtagcttcccctgtggtggaagaaggaatcagatgtttgtcaataatttcgagaatgtcgct |
32313486 |
T |
|
| Q |
101 |
gcaaattttcgatagttcctcctcaaccttttggcaataactcttgatcagtttcacgttgttctcatttcccttagcctcttctttctgttcaattgaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32313485 |
gcaaattttcgatagttcctcctcaaccttttggcaatagctcttgatcagtttcacgttgttctcatttcccttagcctcttctttctgttcaattgaa |
32313386 |
T |
|
| Q |
201 |
gacataatgcgccacgaggctctccttgcaccaatgacatttttatatcccactgagagaagattcctctcttccacagttagctcaacatcaagttttg |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32313385 |
gacataatgcgccacgaggctctccttgcaccaatgacatttttatatcccaccgagagaagattcctctcttccacagttagctcaacatcaagttttg |
32313286 |
T |
|
| Q |
301 |
ctattgtcttcatgcactcaaccatttctgcatcatatatataagtttgaagtttcagagaggaatatcaatatgaaaaattctaaatttcacgactaca |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32313285 |
ctattgtcttcatgcactcaaccatttctgcatcatatatataagtttgaagtttcagagaggaatatcaatatgaaaaattctaaatttcacgactaca |
32313186 |
T |
|
| Q |
401 |
tcctaactaattttgattgcttatctaacatcactactcaaggcaatttc |
450 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32313185 |
ttctaactaattttgattgcttatctaacatcactactcaaggcaatttc |
32313136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 143; Significance: 6e-75; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 11 - 333
Target Start/End: Complemental strand, 19414971 - 19414649
Alignment:
| Q |
11 |
tatgactcacatcttgtagtagaaaacagtagcttcccctgtggtggaagaaggaatcagatgtttgtcaataatttcgagaatgtcgctgcaaattttc |
110 |
Q |
| |
|
||||||||||||||| | ||||||||| ||||||| | | |||||||| ||||| |||||| | |||||||||| |||||||| | || ||||| |
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| T |
19414971 |
tatgactcacatcttatgatagaaaacattagcttctgccgaggtggaagcaggaaccagatgctggtcaataattgtcagaatgtcaccacagattttg |
19414872 |
T |
|
| Q |
111 |
gatagttcctcctcaaccttttggcaataactcttgatcagtttcacgttgttctcatttcccttagcctcttctttctgttcaattgaagacataatgc |
210 |
Q |
| |
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|| ||||||||||||||||||||||| ||||||||||||| ||| || |||| ||||| ||||||| ||| |||||||| |||||||| |||||||||| |
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| T |
19414871 |
gagagttcctcctcaaccttttggcagtaactcttgatcattttaacattgtgttcattacccttagactcctctttctgctcaattgaggacataatgc |
19414772 |
T |
|
| Q |
211 |
gccacgaggctctccttgcaccaatgacatttttatatcccactgagagaagattcctctcttccacagttagctcaacatcaagttttgctattgtctt |
310 |
Q |
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|||| || ||||| | |||||||||||| ||||||||||| |||||||| || |||||||||||||||||||| ||||||||||||||||| | | |||| |
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| T |
19414771 |
gccatgaagctcttcgtgcaccaatgacgtttttatatccaactgagaggaggttcctctcttccacagttagttcaacatcaagttttgccactttctt |
19414672 |
T |
|
| Q |
311 |
catgcactcaaccatttctgcat |
333 |
Q |
| |
|
|||||| |||||||||||||||| |
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|
| T |
19414671 |
catgcattcaaccatttctgcat |
19414649 |
T |
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Back To:
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