View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19555_low_2 (Length: 780)
Name: NF19555_low_2
Description: NF19555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19555_low_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 1 - 381
Target Start/End: Original strand, 52626688 - 52627068
Alignment:
| Q |
1 |
ggaacgtcccataaacccttggatctaagtttgagttctgccttatgtacacgatccaggaaatccacataaggcacgtccgttgtgaacactgatgtgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52626688 |
ggaacgtcccataaacccttggatctaagtttgagttctgccttatgtacacgatccaggaaatccacataaggcacgtccgttgtgaacactgatgtgt |
52626787 |
T |
|
| Q |
101 |
ctataaaatctaaattttttaatagagcttgtatctcctgcaccataaaacgatgtccacacaataaaaatctgtaaacctgtctttttgtcgatgctaa |
200 |
Q |
| |
|
||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52626788 |
ctataaaatctaactttttcaatagagcttgtatctcctgcaccataaaacgatgtccacacaataaaaatctgtaaacctgtctttttgtcgatgctaa |
52626887 |
T |
|
| Q |
201 |
tgcaaataccatatggatcaatcaaaatttaaaatcacaaacaaattaatataatataatttagttaatatttttaagtgacccgaaatattttatctct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52626888 |
tgcaaataccatatggatcaatcaaaatttaaaaccacagacaaattaatataatataatttagttaatatttttaagtgacccgaaatattttatctct |
52626987 |
T |
|
| Q |
301 |
gagtattgaaaaagaagttagaggctgcttttgttaggacgaaattatcttttgcatggattgaggaaagctaaaagaaag |
381 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52626988 |
gagtattgaaaaagaagttagaggctgcttttgttaggacgaaattatcttttgcatggattgaggaaagctaaaagaaag |
52627068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 381 - 608
Target Start/End: Complemental strand, 6334283 - 6334056
Alignment:
| Q |
381 |
gggcgaaggctagcgtgggagagtgacttaggtcactcatggggagtgagtaatctggtccgtttgattataatacaccatcatgagcattatacactaa |
480 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
6334283 |
gggcgaaggctagcgtgggagagtgacttaggtcactcatggggagtgagtaatctggtccgtttgattataatacaccatcatgaacattatacactat |
6334184 |
T |
|
| Q |
481 |
atattttaattattttatcttcctattttcttttgattctgtctcatctttctgactttctctccattgttgggactcacaccactggttacattctctt |
580 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
6334183 |
atattttaattattttatcttcctattttcttttgattctgtctcatccttctgactctctctccattgttgggactcacactactggttacattctctt |
6334084 |
T |
|
| Q |
581 |
tccatcagcattcaccgtccgaagaacg |
608 |
Q |
| |
|
|||||||||| ||||||||||||||||| |
|
|
| T |
6334083 |
tccatcagcactcaccgtccgaagaacg |
6334056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 687 - 760
Target Start/End: Complemental strand, 6333967 - 6333894
Alignment:
| Q |
687 |
ggatggattgtgaaccttaccattctgtttgattcttctttttgggttcatgtttacattttatgcttcttgat |
760 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6333967 |
ggatggattgtgaaccttaccattctgtttgattcttctttttgggttcatgtttacattttatgcttcttgat |
6333894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 382 - 607
Target Start/End: Original strand, 49405804 - 49406029
Alignment:
| Q |
382 |
ggcgaaggctagcgtgggagagtgacttaggtcactcatggggagtgagtaatctggtccgtttgattataatacaccatcatgagcattatacactaaa |
481 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |
|
|
| T |
49405804 |
ggcgaaggctagcgtgggagagtgacttaggtcactcatggggagtgagtaatctggtccgtttgattataatacaccatcatgaatattatacactata |
49405903 |
T |
|
| Q |
482 |
tattttaattattttatcttcctattttcttttgattctgtctcatctttctgactttctctccattgttgggactcacaccactggttacattctcttt |
581 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |||||||||||| |||||||||||||| |
|
|
| T |
49405904 |
tattttaattattttatcttcctattttcttttgattctgtctcatccttctgactctctctccattgttggaactcacaccactagttacattctcttt |
49406003 |
T |
|
| Q |
582 |
ccatcagcattcaccgtccgaagaac |
607 |
Q |
| |
|
||||||||| ||||| |||||||||| |
|
|
| T |
49406004 |
ccatcagcactcaccatccgaagaac |
49406029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 687 - 760
Target Start/End: Original strand, 49406113 - 49406186
Alignment:
| Q |
687 |
ggatggattgtgaaccttaccattctgtttgattcttctttttgggttcatgtttacattttatgcttcttgat |
760 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49406113 |
ggatggattgtgaaccttaccattctgtttgattcttctttttgggttcatgtttacattttatgcttcttgat |
49406186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University