View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19555_low_21 (Length: 441)
Name: NF19555_low_21
Description: NF19555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19555_low_21 |
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| [»] scaffold0147 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 20 - 423
Target Start/End: Complemental strand, 3449276 - 3448873
Alignment:
| Q |
20 |
aaccccatactcattcaaactatccctcacacaaaccctccgtggcggcgcaattttccaggtcaccaacctccaccaagccaaaatcgtcgaacaagcc |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
3449276 |
aaccccatactcattcaaactatccctcacacaaaccctccgtggcggcgcaattttccaggtcaccaacctccaccaagccaaaatcgctgaacaagcc |
3449177 |
T |
|
| Q |
120 |
ggcgcctgcgccgtcaccgtctccgatcaacaacgcatgaccgatccttccctcatcaagtccatcaaacgctccgtttcaatcccagtcatctcccccg |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
3449176 |
ggcgcctgcgccgtcaccgtctccgatcaacaacgcatgaccgatccttccctcatcaaatccatcaaacgctccgtttcaatcccagtcatctcccccg |
3449077 |
T |
|
| Q |
220 |
tcagaatcggccatttcgtcgaagctcaaatcctcgaagccaccggcgttgattacatcgacgaaaacgaatctctcaccatcgccgatgatcagaatca |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3449076 |
tcagaatcggccatttcgtcgaagctcaaatcctcgaagccaccggcgttgattacatcgacgaaaacgaatctctcaccatcgccgatgatcagaatca |
3448977 |
T |
|
| Q |
320 |
catcaacaaacacaatttccgaacaccttttataagctccgcaagtaatctcggtgaagcgctctgtagaatcagagaaggtgcagcgatgataaggatt |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3448976 |
catcaacaaacacaatttccgaacaccttttataagctccgcaagtaatctcggtgaagcgctctgtagaatcagagaaggtgcagcgatgataaggatt |
3448877 |
T |
|
| Q |
420 |
caag |
423 |
Q |
| |
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|||| |
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| T |
3448876 |
caag |
3448873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 20 - 290
Target Start/End: Original strand, 35038833 - 35039103
Alignment:
| Q |
20 |
aaccccatactcattcaaactatccctcacacaaaccctccgtggcggcgcaattttccaggtcaccaacctccaccaagccaaaatcgtcgaacaagcc |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| | |||||||||||| |||| |||||||| ||||||||||||||||| |||||||||| | |
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| T |
35038833 |
aaccccatactcattcaaactatccctcacccaaaccctatgcggcggcgcaattctccacgtcaccaatctccaccaagccaaaatggtcgaacaagtc |
35038932 |
T |
|
| Q |
120 |
ggcgcctgcgccgtcaccgtctccgatcaacaacgcatgaccgatccttccctcatcaagtccatcaaacgctccgtttcaatcccagtcatctcccccg |
219 |
Q |
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|||||||| | |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |||||||||||| || ||||||||||| | |
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| T |
35038933 |
ggcgcctgtgtcgtcaccgtctccgatcaacaacgtatgaccgatccttccctcatcaaatccatcaaacactccgtttcaattcctgtcatctcccctg |
35039032 |
T |
|
| Q |
220 |
tcagaatcggccatttcgtcgaagctcaaatcctcgaagccaccggcgttgattacatcgacgaaaacgaa |
290 |
Q |
| |
|
|||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35039033 |
tcagaatcggtcatttcgtcgaagcttaaatcctcgaagccaccggcgttgattacatcgacgaaaacgaa |
35039103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 160; Significance: 4e-85; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 20 - 290
Target Start/End: Complemental strand, 46205357 - 46205097
Alignment:
| Q |
20 |
aaccccatactcattcaaactatccctcacacaaaccctccgtggcggcgcaattttccaggtcaccaacctccaccaagccaaaatcgtcgaacaagcc |
119 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |||| |||||||| |||||||| | |||||||| | |
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| T |
46205357 |
aaccccatactcattcaaactatccctcacccaaaccctctgtggcggcgcaattctccacgtcaccaa----------gccaaaatggccgaacaagtc |
46205268 |
T |
|
| Q |
120 |
ggcgcctgcgccgtcaccgtctccgatcaacaacgcatgaccgatccttccctcatcaagtccatcaaacgctccgtttcaatcccagtcatctcccccg |
219 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||| |||||||||| |||||||||||| || ||||||||||||| |
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| T |
46205267 |
ggcgcctgtgccgtcaccgtctccgatcaacaatgtatgaccgatccttccctcatcaaatccatcaaacactccgtttcaattcccgtcatctcccccg |
46205168 |
T |
|
| Q |
220 |
tcagaatcggccatttcgtcgaagctcaaatcctcgaagccaccggcgttgattacatcgacgaaaacgaa |
290 |
Q |
| |
|
||||||||| | | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
46205167 |
tcagaatcgatcgtgtcgtcgaagcttaaatcctcgaagccaccggcgttgattacatcgacgaaaacgaa |
46205097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 143; Significance: 6e-75; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 20 - 290
Target Start/End: Original strand, 41587612 - 41587881
Alignment:
| Q |
20 |
aaccccatactcattcaaactatccctcacacaaaccctccgtggcggcgcaattttccaggtcaccaacctccaccaagccaaaatcgtcgaacaagcc |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||| | |||||||||||| |||| |||||||| ||||||||||||||||| | | |||||| | |
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| T |
41587612 |
aaccccatactcattcaaactatccctcac-caaaccctctgcggcggcgcaattctccacgtcaccaatctccaccaagccaaaatggccaaacaagtc |
41587710 |
T |
|
| Q |
120 |
ggcgcctgcgccgtcaccgtctccgatcaacaacgcatgaccgatccttccctcatcaagtccatcaaacgctccgtttcaatcccagtcatctcccccg |
219 |
Q |
| |
|
||| | || ||| | |||||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||| |||||||| || | ||||| ||| | |
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|
| T |
41587711 |
ggcacatgtgcctttaccgtctccgatcaacaacgtatgaccgatccttccctcatcaaatccatcaaacactctgtttcaattcccgccatcttccctg |
41587810 |
T |
|
| Q |
220 |
tcagaatcggccatttcgtcgaagctcaaatcctcgaagccaccggcgttgattacatcgacgaaaacgaa |
290 |
Q |
| |
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|||| ||||| ||| ||||||||||| ||||| | |||||||||| ||||||||||||||||||||||||| |
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|
| T |
41587811 |
tcaggatcggtcatgtcgtcgaagcttaaatctttgaagccaccgacgttgattacatcgacgaaaacgaa |
41587881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0147 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0147
Description:
Target: scaffold0147; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 57 - 1
Alignment:
| Q |
20 |
aaccccatactcattcaaactatccctcacacaaaccctccgtggcggcgcaatttt |
76 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
57 |
aaccccatactcattcaaactatccctcacacaaaccctccgtggcggcgcaatttt |
1 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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