View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19555_low_22 (Length: 440)
Name: NF19555_low_22
Description: NF19555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19555_low_22 |
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| [»] scaffold0001 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 126; Significance: 8e-65; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 42 - 186
Target Start/End: Complemental strand, 18796510 - 18796365
Alignment:
| Q |
42 |
aatcatatagatcaaattaggccccaccaaaatttacaaa-gaaatttatacaataaaatagaccatggatagcatgcaggagaagtgaggaattacaag |
140 |
Q |
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| T |
18796510 |
aatcatatagatgaaattaggccccaccaaaatttacaaaagaaatttatacaataaaatagaccatggatagcatgcaggagaggtgaggaattacaag |
18796411 |
T |
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| Q |
141 |
catggaggatatgtgctttgaatgcggtaaaaatccttatcagaat |
186 |
Q |
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| T |
18796410 |
catggaggatttgtgctttgaatgcggtaaaaatccttatcagaat |
18796365 |
T |
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Target: scaffold0001 (Bit Score: 91; Significance: 6e-44; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 2 - 108
Target Start/End: Original strand, 188192 - 188298
Alignment:
| Q |
2 |
gttcaagcatatatttagacattaatatagataaaacaacaatcatatagatcaaattaggccccaccaaaatttacaaagaaatttatacaataaaata |
101 |
Q |
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|||||| ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
188192 |
gttcaaacatatatttagacatgaatatagacaaaacaacaatcatatagatcaaattaggccccaccaaaatttacaaagaaatttatacaattaaata |
188291 |
T |
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| Q |
102 |
gaccatg |
108 |
Q |
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| T |
188292 |
gaccatg |
188298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 74; Significance: 9e-34; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 44644008 - 44643904
Alignment:
| Q |
1 |
agttcaagcatatatttagacattaatatagataaaacaacaatcatatagatcaaattaggccccaccaaaatttacaaagaaatttatacaataaaat |
100 |
Q |
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| T |
44644008 |
agttcaaacatatatttagacatgaatatagacaaaacaacaagcatatagatcaaattaggacccaccgaaatttac-aagaaatttatacaataaaat |
44643910 |
T |
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| Q |
101 |
agacca |
106 |
Q |
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|||||| |
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| T |
44643909 |
agacca |
44643904 |
T |
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