View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19555_low_23 (Length: 430)
Name: NF19555_low_23
Description: NF19555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19555_low_23 |
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Alignment Details
Target: chr8 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 49 - 408
Target Start/End: Complemental strand, 29896577 - 29896218
Alignment:
| Q |
49 |
cgacaacattacttggtaaaagaatatataaatagacatgcttggtgagagaacatgtctttcttagtgaatcttacttttcaaactcatgaaactctcc |
148 |
Q |
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| T |
29896577 |
cgacaacattacttggtgaaagaatatataaatagacatgcttggtgagagaacatgtctttcttagtgaatcttacttttcaaactcatgaaactctcc |
29896478 |
T |
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| Q |
149 |
cctaaacctatgttgagttcaccaatttattagtagtttagtaaatgttaaaaataaatgaatttattcccacttgttcatctacaacatgaatctgctt |
248 |
Q |
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| T |
29896477 |
cctaaacctatgttgagttcaccaatttattagtagtttagtaaatgttaaaattaaatgaatttattcccacttgttcatctacaacatgaatctgctt |
29896378 |
T |
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| Q |
249 |
caaatacatattaaattatggaaaaggaatcctattaatgcgacattcggtaggaaatttatcaacaaagaatgcattcagtatgaagcatgtctactca |
348 |
Q |
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||| |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29896377 |
caactacagattaaattatggaaaaggaatcctattgatgcgacattcggtaggaaatttatcaacaaagaatgcattcagtatgaagcatgtctactca |
29896278 |
T |
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| Q |
349 |
cacattctctcataaaaaataaccaattcatctgaatggttcttctaacaatagtctgtg |
408 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
29896277 |
cacattctctcataaaaaataaccaattcatctgaatggttcttccaacaatagtctgtg |
29896218 |
T |
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