View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19555_low_24 (Length: 399)
Name: NF19555_low_24
Description: NF19555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19555_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 15 - 254
Target Start/End: Complemental strand, 49726557 - 49726317
Alignment:
| Q |
15 |
cagatacatgatgatagtagcagttgttgtataaggaggcatgaaaacaagaagaggtgttgtgagaacatgataaataatttgtgtggttctgtaatct |
114 |
Q |
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| T |
49726557 |
cagatacatgatgatagtagcagttgttttataaggaggcatgaaaacaagaagaggtgttgtgagaacatgataaataatttgtgtggttctgtaatct |
49726458 |
T |
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| Q |
115 |
atagtgagtaataaataatgtttcagttgatatgatatactaaatatatgccataagacggaagcagtgcagagaaacagagaatggtcttgctatgcag |
214 |
Q |
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| T |
49726457 |
atagtgagtaataaataatgtttcaattgatatgatatactaaatatatgccataagacggaagcagtggagagaaacagagaatggtcttgctatgcag |
49726358 |
T |
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| Q |
215 |
ccatttttgactgagtgtgtg-tttggcaaggtcataatag |
254 |
Q |
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| T |
49726357 |
ccatttttgactgagtgtgtgttttggcaaggtcataatag |
49726317 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 304 - 358
Target Start/End: Complemental strand, 49726329 - 49726275
Alignment:
| Q |
304 |
aaggtcataataggacaagtcaacagtcaacagtggactatcttagtgtatatat |
358 |
Q |
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| T |
49726329 |
aaggtcataataggaaaagtcaacagtcaacagtggactatcttagtatatatat |
49726275 |
T |
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