View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19555_low_26 (Length: 394)
Name: NF19555_low_26
Description: NF19555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19555_low_26 |
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Alignment Details
Target: chr4 (Bit Score: 172; Significance: 3e-92; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 192 - 388
Target Start/End: Complemental strand, 44154520 - 44154316
Alignment:
| Q |
192 |
tgaattcaaggatgttctttctgatttcatttgtttgaatttagaatgtttcattatgatttttgaatgtgttgttgttggtaattaatgtttgatt--- |
288 |
Q |
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| T |
44154520 |
tgaattcaaggatgttctttctgatttcatttgtttgaatttagaatgtttcattatgatttttgaatgtgttgttgttggtaattaatgtttgattaat |
44154421 |
T |
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| Q |
289 |
-----gattgatggatgctaatgatgcagtaacagtagaaggagaatattatgtgttcaaagacaagtcaaactccatcaaatacatgacccctgatgat |
383 |
Q |
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| T |
44154420 |
tgattgattgatggatgctaatgatgcagtaacagtagaaggagaatattatgtgttcaaagacaagtcaaactccatcaaatacatgacccctgatgat |
44154321 |
T |
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| Q |
384 |
gtcca |
388 |
Q |
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|||| |
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| T |
44154320 |
ttcca |
44154316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 192 - 388
Target Start/End: Complemental strand, 40899237 - 40899041
Alignment:
| Q |
192 |
tgaattcaaggatgttctttctgatttcatttgtttgaatttagaatgtttcattatgatttttgaatgtgttgttgttggtaattaatgtttgattgat |
291 |
Q |
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| T |
40899237 |
tgaattcaaggatgttctttctgatttcatttgtttgaatttagaatgtttcattatgatttttgaatgtgttgttgttggtaattaatttttgattgat |
40899138 |
T |
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| Q |
292 |
tgatggatgctaatgatgcagtaacagtagaaggagaatattatgtgttcaaagacaagtcaaactccatcaaatacatgacccctgatgatgtcca |
388 |
Q |
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| T |
40899137 |
tgatggatgctaacgatgctgtaacagtaaaaggagaatattatgtgttcaaagacaaatcaaactccatcaaatgcatgacccctgatgatttcca |
40899041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 18 - 164
Target Start/End: Complemental strand, 44154694 - 44154548
Alignment:
| Q |
18 |
atttccaaagtcgaagaagagaaaagacgatttcatgagctctgataaactggcggagggacccaaatcagcagattatggctttgattatgaaagtatt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
44154694 |
atttccaaagtcgaagaagagaaaagacgatttcatgagctctgataaactggcggagggacccaaatcatcagattatggctttgattatgaaagtatt |
44154595 |
T |
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| Q |
118 |
actactcttcttgctggcatatttcatttgttaatgtttcatcacgc |
164 |
Q |
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| T |
44154594 |
actactcttcttgctggcatatttcattttttaatgtttcatcacgc |
44154548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 23 - 164
Target Start/End: Complemental strand, 40899406 - 40899265
Alignment:
| Q |
23 |
caaagtcgaagaagagaaaagacgatttcatgagctctgataaactggcggagggacccaaatcagcagattatggctttgattatgaaagtattactac |
122 |
Q |
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| T |
40899406 |
caaagtcgaaaaagagaaaatgcgatgtcatgagctctgataaactggcggaggaaccgaaaaaagcagattatggctttgattatgaaagtattactac |
40899307 |
T |
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| Q |
123 |
tcttcttgctggcatatttcatttgttaatgtttcatcacgc |
164 |
Q |
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| T |
40899306 |
tcttcttgctggcatatttcatttgttaatgtttcatcacgc |
40899265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 204 - 271
Target Start/End: Original strand, 40893762 - 40893829
Alignment:
| Q |
204 |
tgttctttctgatttcatttgtttgaatttagaatgtttcattatgatttttgaatgtgttgttgttg |
271 |
Q |
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|||| ||||||||||||||||||| | |||||| |||| |||||||||||||||||||||||||||| |
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| T |
40893762 |
tgttgtttctgatttcatttgttttagtttagatggtttaattatgatttttgaatgtgttgttgttg |
40893829 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 111 - 156
Target Start/End: Complemental strand, 44154303 - 44154258
Alignment:
| Q |
111 |
aagtattactactcttcttgctggcatatttcatttgttaatgttt |
156 |
Q |
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||||||||||||||||||| ||| | |||||||||||||||||||| |
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| T |
44154303 |
aagtattactactcttctttctgacttatttcatttgttaatgttt |
44154258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 156
Target Start/End: Complemental strand, 40899028 - 40898983
Alignment:
| Q |
111 |
aagtattactactcttcttgctggcatatttcatttgttaatgttt |
156 |
Q |
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||||||||||||||||||| ||| | ||||||| |||||||||||| |
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| T |
40899028 |
aagtattactactcttctttctgacttatttcagttgttaatgttt |
40898983 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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