View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19555_low_28 (Length: 390)

Name: NF19555_low_28
Description: NF19555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19555_low_28
NF19555_low_28
[»] chr6 (3 HSPs)
chr6 (2-352)||(33029558-33029909)
chr6 (69-218)||(9961147-9961296)
chr6 (94-218)||(29396471-29396595)
[»] chr4 (5 HSPs)
chr4 (69-218)||(45283082-45283231)
chr4 (121-218)||(40262411-40262508)
chr4 (141-218)||(16182245-16182322)
chr4 (94-224)||(4641596-4641727)
chr4 (94-134)||(12842305-12842345)
[»] chr5 (2 HSPs)
chr5 (97-218)||(31805419-31805540)
chr5 (94-213)||(36193766-36193885)
[»] chr7 (1 HSPs)
chr7 (94-213)||(46205837-46205956)
[»] chr8 (2 HSPs)
chr8 (64-136)||(36019655-36019727)
chr8 (94-213)||(43899034-43899154)
[»] chr2 (2 HSPs)
chr2 (94-194)||(24441977-24442077)
chr2 (94-143)||(40611591-40611640)
[»] chr1 (1 HSPs)
chr1 (121-204)||(39192955-39193038)
[»] chr3 (2 HSPs)
chr3 (94-150)||(2043758-2043814)
chr3 (132-172)||(25288848-25288888)


Alignment Details
Target: chr6 (Bit Score: 283; Significance: 1e-158; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 2 - 352
Target Start/End: Original strand, 33029558 - 33029909
Alignment:
Q  2 aaccaaacacaaccttattttgttattaatcggtactcaaacctaacttcaaacccataaaataaataggaatgatatgtgagcatatcatctgtacaac 101  Q
    |||||||||||||||||||| |||||||||||||| |||||||||||||||||| || |||||||| |||||||||||||||||||||||||||||||||    
T  33029558 aaccaaacacaaccttatttagttattaatcggtaatcaaacctaacttcaaactcagaaaataaagaggaatgatatgtgagcatatcatctgtacaac 33029657  T
Q  102 caacaacttatctgctatgttttaatattttttgattgatttcaatttacatgcttatcacaatgttatatggtggtacgttagttgtccaattttggtt 201  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| | ||||||||||||||||||||||    
T  33029658 caacaacttatctgctatgttttaatattttttgattgatttcgatttacatgctcatcacaatgttatatggtgttgcgttagttgtccaattttggtt 33029757  T
Q  202 gtataaataacacaactttaaaataaatcaacattaaaaaccatagtcaaatgttagaataatttacctcctacaccataaaaaccatgaatttccctaa 301  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33029758 gtataaataacacaactctaaaataaatcaacattaaaaaccatagtcaaatgttagaataatttacctcctacaccataaaaaccatgaatttccctaa 33029857  T
Q  302 ttacccttcatcctatttaat-nnnnnnnttatgtttaaaagcaacattcaa 352  Q
    |||||||||||||||||||||        |||||||||||||||||||||||    
T  33029858 ttacccttcatcctatttaataaaaaaaattatgtttaaaagcaacattcaa 33029909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 69 - 218
Target Start/End: Complemental strand, 9961296 - 9961147
Alignment:
Q  69 aggaatgatatgtgagcatatcatctgtacaaccaacaacttatctgctatgttttaatattttttgattgatttcaatttacatgcttatcacaatgtt 168  Q
    ||||||||||||||| ||| || | ||||||||||||||||||| |||||| |||||||||||||||||||||||| |||||| ||||| ||||||||||    
T  9961296 aggaatgatatgtgaacatctcgtttgtacaaccaacaacttatttgctattttttaatattttttgattgatttcgatttacgtgcttctcacaatgtt 9961197  T
Q  169 atatggtggtacgttagttgtccaattttggttgtataaataacacaact 218  Q
    |||||||| ||| ||| |||| ||||||| |||||| |||||||||||||    
T  9961196 atatggtgttacattaattgttcaattttagttgtacaaataacacaact 9961147  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 218
Target Start/End: Original strand, 29396471 - 29396595
Alignment:
Q  94 tgtacaaccaacaacttatctgctatgttttaat-attttttgattgatttcaatttacatgcttatcacaatgttatatggtggtacgttagttgtcca 192  Q
    ||||||||||||||||||| |||||| ||||||| || |||||||||||||| ||||   ||||  |||||| |||| | | || | | || ||||||||    
T  29396471 tgtacaaccaacaacttatttgctat-ttttaatgatattttgattgatttcgatttttgtgctcctcacaaagttaaaggttgttgcattggttgtcca 29396569  T
Q  193 attttggttgtataaataacacaact 218  Q
    ||||| | |||| |||||||| ||||    
T  29396570 attttagatgtacaaataacataact 29396595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 6e-22; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 69 - 218
Target Start/End: Complemental strand, 45283231 - 45283082
Alignment:
Q  69 aggaatgatatgtgagcatatcatctgtacaaccaacaacttatctgctatgttttaatattttttgattgatttcaatttacatgcttatcacaatgtt 168  Q
    ||||||||||||||| ||| |||| |||| ||||| |||||||| | |||| |||||||||||||| ||||||||| |||| ||| ||  ||||| ||||    
T  45283231 aggaatgatatgtgaacatctcatttgtaaaaccagcaacttattttctattttttaatatttttttattgatttcgatttgcatactcctcacattgtt 45283132  T
Q  169 atatggtggtacgttagttgtccaattttggttgtataaataacacaact 218  Q
    |||||||  | | |||||| |||||||||  ||||| |||||||| ||||    
T  45283131 atatggtattgcattagttctccaattttaattgtacaaataacataact 45283082  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 121 - 218
Target Start/End: Original strand, 40262411 - 40262508
Alignment:
Q  121 ttttaatattttttgattgatttcaatttacatgcttatcacaatgttatatggtggtacgttagttgtccaattttggttgtataaataacacaact 218  Q
    |||||||||||||||| |||||||||||| ||||||  |||  |||| | |||||| | | |||||||||||||||| | |||| |||||||||||||    
T  40262411 ttttaatattttttgactgatttcaatttgcatgctcctcaagatgtaaaatggtgttgcattagttgtccaattttagatgtacaaataacacaact 40262508  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 141 - 218
Target Start/End: Complemental strand, 16182322 - 16182245
Alignment:
Q  141 tttcaatttacatgcttatcacaatgttatatggtggtacgttagttgtccaattttggttgtataaataacacaact 218  Q
    ||||||||| ||||||  ||||| |||||| ||||| | | |||||||||||||||||||||||  ||||||||||||    
T  16182322 tttcaatttgcatgctcctcacattgttatttggtgttgcattagttgtccaattttggttgtacgaataacacaact 16182245  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 94 - 224
Target Start/End: Complemental strand, 4641727 - 4641596
Alignment:
Q  94 tgtacaaccaacaacttatctgctatgttttaata-ttttttgattgatttcaatttacatgcttatcacaatgttatatggtggtacgttagttgtcca 192  Q
    ||||||||||||||||| | ||| || |||||||| |||||| |||||||| ||||| | ||||| ||||||||| | | | || | | | | || ||||    
T  4641727 tgtacaaccaacaacttctttgcaattttttaatactttttttattgattttaatttgcgtgcttctcacaatgtcaaaggttgttgcataaattatcca 4641628  T
Q  193 attttggttgtataaataacacaactttaaaa 224  Q
    |||||||||||| | || |||||||| |||||    
T  4641627 attttggttgtacatattacacaactctaaaa 4641596  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 94 - 134
Target Start/End: Original strand, 12842305 - 12842345
Alignment:
Q  94 tgtacaaccaacaacttatctgctatgttttaatatttttt 134  Q
    ||||||||||||||||| | |||||| ||||||||||||||    
T  12842305 tgtacaaccaacaacttctttgctattttttaatatttttt 12842345  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 97 - 218
Target Start/End: Original strand, 31805419 - 31805540
Alignment:
Q  97 acaaccaacaacttatctgctatgttttaatattttttgattgatttcaatttacatgcttatcacaatgttatatggtggtacgttagttgtccaattt 196  Q
    |||||||||||||||| | |||| | |||||| ||||| ||||||||  |||||| | ||  |||||||||||||||||| ||   |||||| |||||||    
T  31805419 acaaccaacaacttatttactatttcttaatactttttaattgattttgatttaccttctcttcacaatgttatatggtgttatactagttgcccaattt 31805518  T
Q  197 tggttgtataaataacacaact 218  Q
    |  ||| | |||||||||||||    
T  31805519 taattgaacaaataacacaact 31805540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 94 - 213
Target Start/End: Original strand, 36193766 - 36193885
Alignment:
Q  94 tgtacaaccaacaacttatctgctatgttttaatattttttgattgatttcaatttacatgcttatcacaatgttatatggtggtacgttagttgtccaa 193  Q
    ||||||||||||||| | | |||||| || ||||||||||| | ||||||| |||| | ||||  ||||||| ||| | |||| | | |||||||| |||    
T  36193766 tgtacaaccaacaacctttttgctattttataatatttttttagtgatttcgatttgcgtgctcttcacaatattaaaaggtgttgcattagttgttcaa 36193865  T
Q  194 ttttggttgtataaataaca 213  Q
    ||||| ||||| | ||||||    
T  36193866 ttttgattgtacatataaca 36193885  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 94 - 213
Target Start/End: Complemental strand, 46205956 - 46205837
Alignment:
Q  94 tgtacaaccaacaacttatctgctatgttttaatattttttgattgatttcaatttacatgcttatcacaatgttatatggtggtacgttagttgtccaa 193  Q
    ||||||||||||||| | | | |||| || ||||||||||| | ||||||| ||| || ||||  ||||||| ||| | |||| | | ||||||||||||    
T  46205956 tgtacaaccaacaacctttttactattttataatatttttttagtgatttcgattcacgtgctcctcacaatattaaaaggtgttgcattagttgtccaa 46205857  T
Q  194 ttttggttgtataaataaca 213  Q
    ||||||||||| | ||||||    
T  46205856 ttttggttgtacatataaca 46205837  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 64 - 136
Target Start/End: Complemental strand, 36019727 - 36019655
Alignment:
Q  64 taaataggaatgatatgtgagcatatcatctgtacaaccaacaacttatctgctatgttttaatattttttga 136  Q
    |||| |||||||| |||||| ||| |  | ||||||||||||||||||| |||||  ||||||||||||||||    
T  36019727 taaagaggaatgacatgtgaacatcttttgtgtacaaccaacaacttatttgctactttttaatattttttga 36019655  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 213
Target Start/End: Original strand, 43899034 - 43899154
Alignment:
Q  94 tgtacaaccaacaacttatctgctatgttttaata-ttttttgattgatttcaatttacatgcttatcacaatgttatatggtggtacgttagttgtcca 192  Q
    ||||||||||||||||| | |||||| |||||||| |||||| ||||||||  |||| | ||||  | ||| | ||| | |||| | | |||||||| ||    
T  43899034 tgtacaaccaacaacttctttgctattttttaatattttttttattgattttgatttgcgtgctccttacagtattaaagggtgttgcattagttgttca 43899133  T
Q  193 attttggttgtataaataaca 213  Q
    |||||||||||| ||||||||    
T  43899134 attttggttgtacaaataaca 43899154  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 194
Target Start/End: Original strand, 24441977 - 24442077
Alignment:
Q  94 tgtacaaccaacaacttatctgctatgttttaatattttttgattgatttcaatttacatgcttatcacaatgttatatggtggtacgttagttgtccaa 193  Q
    ||||||||||||||| | | |||||| || ||||||||||| | ||||||| |||| ||||||  ||||||| ||| | |||| | | ||||||||||||    
T  24441977 tgtacaaccaacaacctttttgctattttataatatttttttagtgatttcgatttgcatgctcctcacaatattaaaaggtgttgcattagttgtccaa 24442076  T
Q  194 t 194  Q
    |    
T  24442077 t 24442077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 143
Target Start/End: Original strand, 40611591 - 40611640
Alignment:
Q  94 tgtacaaccaacaacttatctgctatgttttaatattttttgattgattt 143  Q
    ||||||||||||||||| | |||||| ||||||||| |||| ||||||||    
T  40611591 tgtacaaccaacaacttttttgctattttttaatatatttttattgattt 40611640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 121 - 204
Target Start/End: Original strand, 39192955 - 39193038
Alignment:
Q  121 ttttaatattttttgattgatttcaatttacatgcttatcacaatgttatatggtggtacgttagttgtccaattttggttgta 204  Q
    |||||||||||||||||||||||||||||   || |  || ||||||||||| ||| | | ||||||||| ||||||| |||||    
T  39192955 ttttaatattttttgattgatttcaatttgtgtgttactcgcaatgttatatagtgttgcattagttgtctaattttgattgta 39193038  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 94 - 150
Target Start/End: Original strand, 2043758 - 2043814
Alignment:
Q  94 tgtacaaccaacaacttatctgctatgttttaatattttttgattgatttcaattta 150  Q
    ||||||||||||||||||| |||||| ||| |  || |||||||||||||| |||||    
T  2043758 tgtacaaccaacaacttatttgctatctttaatgatattttgattgatttcgattta 2043814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 132 - 172
Target Start/End: Original strand, 25288848 - 25288888
Alignment:
Q  132 tttgattgatttcaatttacatgcttatcacaatgttatat 172  Q
    ||||||||||||| |||||||||||| ||||||| ||||||    
T  25288848 tttgattgatttcgatttacatgcttttcacaattttatat 25288888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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