View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19555_low_30 (Length: 385)
Name: NF19555_low_30
Description: NF19555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19555_low_30 |
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Alignment Details
Target: chr5 (Bit Score: 326; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 366
Target Start/End: Original strand, 34298638 - 34299003
Alignment:
| Q |
1 |
aaaactcatctttgttccatgttggagaagtgaaatctaattccaaatctttcacttcatttcttatagcgaatctaatacatcgatcaatgtcctcact |
100 |
Q |
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| T |
34298638 |
aaaactcatctttgttccatgttggagaagtgaaatctaattccaaatctttcacttcatttcttatagcgaatctaatacatcgatcaatgtcctcact |
34298737 |
T |
|
| Q |
101 |
aaatactttatgagctgacatttttaaagagaatttgtcaatggcattttctccatgattttctatccattttttcatgaaatccaaaaatgtcattctt |
200 |
Q |
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|||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |
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| T |
34298738 |
aaatacattatgagctgacattgttaaagagaatttgtcaatggcattttctccatgattttctatcccttttttcatgaaatccaaaaatgccattctt |
34298837 |
T |
|
| Q |
201 |
tgagcatgaacaatttcatgaggttgatcaaatttaacaaagaagagttcattgaactctatgtttcttgttaatttgcataccttcttccaatctttag |
300 |
Q |
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|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |
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| T |
34298838 |
tgagaatgaacaatttcatgaggttgatcaaatttaataaagaagagttcattgaactctatgtttcttgttaatttgcatacattctcccaatctttag |
34298937 |
T |
|
| Q |
301 |
aaaggattgaagttttcacagcatccttaaaagggagagaggagacaatgattgatagcaatgaat |
366 |
Q |
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| T |
34298938 |
agagggttgaagttttcacagcatccttaaaagggagagaggagacaatgattgatagcaatgaat |
34299003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 207 - 366
Target Start/End: Original strand, 34285469 - 34285628
Alignment:
| Q |
207 |
tgaacaatttcatgaggttgatcaaatttaacaaagaagagttcattgaactctatgtttcttgttaatttgcataccttcttccaatctttagaaagga |
306 |
Q |
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| T |
34285469 |
tgaacaatttcatgagtttgatcaaatttaataaagaagagttcattgaactctatgtttcttgttaatttgcataccttcttccaatctttagaaagga |
34285568 |
T |
|
| Q |
307 |
ttgaagttttcacagcatccttaaaagggagagaggagacaatgattgatagcaatgaat |
366 |
Q |
| |
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|||||||| || |||||||||||||||||||||||||||||| ||||||||| ||||||| |
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| T |
34285569 |
ttgaagttctcgcagcatccttaaaagggagagaggagacaaagattgatagaaatgaat |
34285628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 239 - 360
Target Start/End: Original strand, 34302330 - 34302451
Alignment:
| Q |
239 |
aaagaagagttcattgaactctatgtttcttgttaatttgcataccttcttccaatctttagaaaggattgaagttttcacagcatccttaaaagggaga |
338 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
34302330 |
aaagaagagttcattgaactctatgtttcttgttaatttgcatacgttctcccaatctttagagaggattgaagttttcacagcatccttaaaagggaga |
34302429 |
T |
|
| Q |
339 |
gaggagacaatgattgatagca |
360 |
Q |
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|||||||||||||||||||||| |
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| T |
34302430 |
gaggagacaatgattgatagca |
34302451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 124 - 314
Target Start/End: Original strand, 28249266 - 28249456
Alignment:
| Q |
124 |
ttaaagagaatttgtcaatggcattttctccatgattttctatccattttttcatgaaatccaaaaatgtcattctttgagcatgaacaatttcatgagg |
223 |
Q |
| |
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|||||||||||||||||||| ||| |||||| |||||||| ||||||||| || |||| | |||||| | |||||||||||| |||||||||| ||| |
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| T |
28249266 |
ttaaagagaatttgtcaatgacatcttctccgtgattttcaatccattttctcgcgaaagctgaaaatgcccttctttgagcatcaacaatttcaggaga |
28249365 |
T |
|
| Q |
224 |
ttgatcaaatttaacaaagaagagttcattgaactctatgtttcttgttaatttgcataccttcttccaatctttagaaaggattgaagtt |
314 |
Q |
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|| | ||| |||||||||||||||||||||||||||||| ||| ||||| |||||||||||||| |||||||||||| || || |||||| |
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| T |
28249366 |
ttaaccaactttaacaaagaagagttcattgaactctatttttgttgttgatttgcataccttcacccaatctttagagagaatagaagtt |
28249456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 132 - 266
Target Start/End: Original strand, 28235032 - 28235166
Alignment:
| Q |
132 |
aatttgtcaatggcattttctccatgattttctatccattttttcatgaaatccaaaaatgtcattctttgagcatgaacaatttcatgaggttgatcaa |
231 |
Q |
| |
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||||| |||||| |||||||| || ||| || ||||| ||||||||||||| |||||||| ||||||||||| | || ||||||| || |||||||| |
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| T |
28235032 |
aatttttcaatgacattttctgcacgatcttggatccactttttcatgaaattaaaaaatgttattctttgagcgtcaataatttcagaagattgatcaa |
28235131 |
T |
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| Q |
232 |
atttaacaaagaagagttcattgaactctatgttt |
266 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
28235132 |
atttaacaaagaagagttcattgaactctatgttt |
28235166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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