View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19555_low_31 (Length: 384)
Name: NF19555_low_31
Description: NF19555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19555_low_31 |
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Alignment Details
Target: chr8 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 21 - 373
Target Start/End: Original strand, 10399409 - 10399762
Alignment:
| Q |
21 |
gtgaggctattttgtgtacactagttgctgcaagagataaaa-aactttctcaaattggaaaggacgatattggaaaacttgttgtgtattgttctgatc |
119 |
Q |
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| T |
10399409 |
gtgaggctattttgtgtaccctagttgctgcaagagataaaaaaactttctcaaattggaaaggacaatattggaaaacttgttgtgtattgttctgatc |
10399508 |
T |
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| Q |
120 |
aaacacatagtgcacttcaaaaagcttctcaaattgttggaattaattcagaaaattttagagtcataaaaacaaaaggatcaaatttatttgctttgtc |
219 |
Q |
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| T |
10399509 |
aaacacatagtgcacttcaaaaagcaactcaaattgttggaattcattcagaaaattttagagtcataaaaacaaaaggatcaaatttatttgctttgtc |
10399608 |
T |
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| Q |
220 |
ccccgactctttgctttcgacaattcttttagacgttgaaaatggtttggttccttgttttttatgcgctactattggaacaacttcaacaaatgcggtt |
319 |
Q |
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| T |
10399609 |
ccccgactctttgctttcgacaattcttttagacgttgacaatggtttgattccttattttttatgcgctactattggaacaacttcaacaaatgccgtt |
10399708 |
T |
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| Q |
320 |
gatcctataaagttgttgtgtaatgtgacaaaagaatacgatatttgggttcat |
373 |
Q |
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| T |
10399709 |
gatcctataaagttgttgtgtaatgtgacaaaagaatacgatatttgggttcat |
10399762 |
T |
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Back To:
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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 144
Target Start/End: Original strand, 21197950 - 21197999
Alignment:
| Q |
95 |
aaacttgttgtgtattgttctgatcaaacacatagtgcacttcaaaaagc |
144 |
Q |
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| T |
21197950 |
aaacttgttgtttatggctctgatcaaacacattgtgcagttcaaaaagc |
21197999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 144
Target Start/End: Original strand, 11004556 - 11004605
Alignment:
| Q |
95 |
aaacttgttgtgtattgttctgatcaaacacatagtgcacttcaaaaagc |
144 |
Q |
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| T |
11004556 |
aaacttgttgtttatggctctgatcaaacacattgtgcagttcaaaaagc |
11004605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 144
Target Start/End: Original strand, 11014884 - 11014933
Alignment:
| Q |
95 |
aaacttgttgtgtattgttctgatcaaacacatagtgcacttcaaaaagc |
144 |
Q |
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| T |
11014884 |
aaacttgttgtttatggctctgatcaaacacattgtgcagttcaaaaagc |
11014933 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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