View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19555_low_32 (Length: 384)
Name: NF19555_low_32
Description: NF19555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19555_low_32 |
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Alignment Details
Target: chr8 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 17 - 376
Target Start/End: Complemental strand, 2263464 - 2263105
Alignment:
| Q |
17 |
agatcaagactcctttttcttcaggggagatcaagatttcccgttgttactaggtgtactcttaatatatttaatgactacggtttagatatcaagctca |
116 |
Q |
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| T |
2263464 |
agatcaagactcctttttcttcaggggagatcaagatttcccgttgttactaggtgtactcttaatatatttaatgactacggtttagatatcaagctca |
2263365 |
T |
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| Q |
117 |
aagattttatttttaaaaggaaatcaagttttgtttgagatctaaacttttcgatttagattgaacggtcacatagttattcagtgtgaaaatgtatata |
216 |
Q |
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| T |
2263364 |
aagattttatttttaaaaggaaatcaagttttgtttgagatctaaacctttcgatttagattgaacggtcacatagttattcagtgtgaaaatgtatata |
2263265 |
T |
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| Q |
217 |
gtatagttagtgacggtagataatccaatcccacaaggagggcataatctcatctgcataaaatgatagtctagtcacacttgtaaagttgtaatgaaaa |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2263264 |
gtatagttagtgacggtagataatccaatcccacaaggagggcataatctcatctgcataaaatgatagtctagtcacacttgtaaagttgtaatgaaaa |
2263165 |
T |
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| Q |
317 |
caagcatatcgtaaaattggatttcatgcaaactgatgagaacctaaattgaatattctt |
376 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2263164 |
caagcatatcgtaaaattggatttcatgcaaactgatgagaacctaaattgaatattctt |
2263105 |
T |
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