View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19555_low_33 (Length: 383)
Name: NF19555_low_33
Description: NF19555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19555_low_33 |
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Alignment Details
Target: chr8 (Bit Score: 283; Significance: 1e-158; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 11 - 373
Target Start/End: Complemental strand, 5317004 - 5316642
Alignment:
| Q |
11 |
tcatcatattccaccagtttccctttaattatgaccagccaaaaattatgaggcaaccaatagtactaaaacacagaagcagnnnnnnnnnnnnnnnnnn |
110 |
Q |
| |
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||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5317004 |
tcatcatattccatcactttccctttaattatgaccagccaaaaattatgaggcaaccaatagtactaaaacacagaagcagaaaaaatggaaaataaaa |
5316905 |
T |
|
| Q |
111 |
nngaatgaagaataaggattaagcataccataaattaagaccatgaccatgtcactatctattacagttggaattctgtgagcaacggttataaccgtgc |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5316904 |
aagaatgaagaataaggattaagcataccataagataagaccatgaccatgtcactatctattacagttggaattctgtgagcaacggttataaccgtgc |
5316805 |
T |
|
| Q |
211 |
attctgcaaattcttgtctaattactctttgtagaatggcatctgtggcagagtcaatggaggcagtagcttcatccagaactagaatcctgttcctctt |
310 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5316804 |
attctgaaaattcttgtctaattactctttgtagaatggcatctgtggcagagtcaatggaggcagtagcttcatccagaactagaatcctgttcctctt |
5316705 |
T |
|
| Q |
311 |
aagtagaactcttccaagacaaaacaattgcctttgtcccaagctccaatttccaccttcatc |
373 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5316704 |
aagtagaactcttccaagacaaaacaattgcctttgtcccaagctccaatttccaccttcatc |
5316642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 11 - 373
Target Start/End: Original strand, 5279090 - 5279453
Alignment:
| Q |
11 |
tcatcatattccaccagtttccctttaattatgaccagccaaaaattatgaggcaaccaa-tagtactaaaacacagaagcagnnnnnnnnnnnnnnnnn |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |
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| T |
5279090 |
tcatcatattccaccagtttccctttaattatgaccagccaaaaattatgaggcaaccaaatagtactaaaaaacagaagcagaaaaaatggaaaataaa |
5279189 |
T |
|
| Q |
110 |
nnngaatgaagaataaggattaagcataccataaattaagaccatgaccatgtcactatctattacagttggaattctgtgagcaacggttataaccgtg |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||| ||||||||| || |||||||| ||| |
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|
| T |
5279190 |
aatgaatgaagaataaggattaagcataccataagataagaccagaaccatgtcactgtctattacagttggaactctgtgagccacagttataactgtg |
5279289 |
T |
|
| Q |
210 |
cattctgcaaattcttgtctaattactctttgtagaatggcatctgtggcagagtcaatggaggcagtagcttcatccagaactagaatcctgttcctct |
309 |
Q |
| |
|
|||||| | ||||||||||||||||||||||||||||| ||||||||||| ||||||||||| || || |||||||| ||||| ||||| || || || | |
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| T |
5279290 |
cattcttcgaattcttgtctaattactctttgtagaattgcatctgtggctgagtcaatggatgctgttgcttcatctagaacaagaattctatttcttt |
5279389 |
T |
|
| Q |
310 |
taagtagaactcttccaagacaaaacaattgcctttgtcccaagctccaatttccaccttcatc |
373 |
Q |
| |
|
||||||||||||||||||| ||||||| ||||| ||||| ||||||||||||||||||||||| |
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|
| T |
5279390 |
taagtagaactcttccaaggcaaaacagttgccgctgtcctaagctccaatttccaccttcatc |
5279453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 117 - 373
Target Start/End: Complemental strand, 5310250 - 5309994
Alignment:
| Q |
117 |
gaagaataaggattaagcataccataaattaagaccatgaccatgtcactatctattacagttggaattctgtgagcaacggttataaccgtgcattctg |
216 |
Q |
| |
|
|||||||||||| | |||||||||| || |||||||||||||||||| ||||| |||||||||| ||||||||| || ||||| || |||||||||| |
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|
| T |
5310250 |
gaagaataaggaaataacataccataagataggaccatgaccatgtcactgtctatgacagttggaactctgtgagccacagttatgactgtgcattctg |
5310151 |
T |
|
| Q |
217 |
caaattcttgtctaattactctttgtagaatggcatctgtggcagagtcaatggaggcagtagcttcatccagaactagaatcctgttcctcttaagtag |
316 |
Q |
| |
|
|||||||||||||||||||||||||||| || |||||||||| ||||||||| ||||||||||||||||||||||| ||||| |||| ||||||||||| |
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|
| T |
5310150 |
caaattcttgtctaattactctttgtagtattgcatctgtggaagagtcaatagaggcagtagcttcatccagaacaagaattttgtttctcttaagtag |
5310051 |
T |
|
| Q |
317 |
aactcttccaagacaaaacaattgcctttgtcccaagctccaatttccaccttcatc |
373 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
5310050 |
aactcttccaagacaaaacaattgcctttgtctcaagctccaatttccaccttcatc |
5309994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 134 - 373
Target Start/End: Original strand, 5286941 - 5287180
Alignment:
| Q |
134 |
cataccataaattaagaccatgaccatgtcactatctattacagttggaattctgtgagcaacggttataaccgtgcattctgcaaattcttgtctaatt |
233 |
Q |
| |
|
|||||||||| || |||||||||||||||||| |||||||||||||||| ||||||||| || |||||||| |||||||||| |||||||||||||||| |
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|
| T |
5286941 |
cataccataagataggaccatgaccatgtcactgtctattacagttggaactctgtgagccacagttataactgtgcattctgaaaattcttgtctaatt |
5287040 |
T |
|
| Q |
234 |
actctttgtagaatggcatctgtggcagagtcaatggaggcagtagcttcatccagaactagaatcctgttcctcttaagtagaactcttccaagacaaa |
333 |
Q |
| |
|
|||||||||||||| ||||| || |||||||||||||| || || |||||||||||||| ||||| ||||| ||||||||||||||||||||||| |||| |
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|
| T |
5287041 |
actctttgtagaattgcatccgtcgcagagtcaatggatgctgttgcttcatccagaacaagaattctgtttctcttaagtagaactcttccaaggcaaa |
5287140 |
T |
|
| Q |
334 |
acaattgcctttgtcccaagctccaatttccaccttcatc |
373 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5287141 |
acaattgcctttgtcccaagctccaatttccaccttcatc |
5287180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 117 - 373
Target Start/End: Complemental strand, 15128882 - 15128626
Alignment:
| Q |
117 |
gaagaataaggattaagcataccataaattaagaccatgaccatgtcactatctattacagttggaattctgtgagcaacggttataaccgtgcattctg |
216 |
Q |
| |
|
|||||||||||| | | |||||||||| || ||||||||||||||||| |||||||||||||||| |||||||||||| |||||||| ||||||||| |
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|
| T |
15128882 |
gaagaataaggaattaacataccataagatagaaccatgaccatgtcactgtctattacagttggaactctgtgagcaacagttataactgtgcattctt |
15128783 |
T |
|
| Q |
217 |
caaattcttgtctaattactctttgtagaatggcatctgtggcagagtcaatggaggcagtagcttcatccagaactagaatcctgttcctcttaagtag |
316 |
Q |
| |
|
|||||||||||||||||| |||||||||||| ||||||||||| || |||||||| |||||||||||||||| ||| ||||| |||||||| |||||||| |
|
|
| T |
15128782 |
caaattcttgtctaattattctttgtagaatcgcatctgtggctgaatcaatggatgcagtagcttcatccaaaacaagaattctgttccttttaagtag |
15128683 |
T |
|
| Q |
317 |
aactcttccaagacaaaacaattgcctttgtcccaagctccaatttccaccttcatc |
373 |
Q |
| |
|
||||||||| || ||||| ||||| | |||||||||||||||||||||||||||||| |
|
|
| T |
15128682 |
aactcttccgaggcaaaataattggcgttgtcccaagctccaatttccaccttcatc |
15128626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 121 - 373
Target Start/End: Original strand, 14946202 - 14946454
Alignment:
| Q |
121 |
aataaggattaagcataccataaattaagaccatgaccatgtcactatctattacagttggaattctgtgagcaacggttataaccgtgcattctgcaaa |
220 |
Q |
| |
|
|||||||| | | |||||||||| || |||||||||||||||||| |||||||||||||||| |||||||||||| |||||||| ||||||||| |||| |
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|
| T |
14946202 |
aataaggaattaacataccataagataggaccatgaccatgtcactgtctattacagttggaactctgtgagcaacagttataactgtgcattcttcaaa |
14946301 |
T |
|
| Q |
221 |
ttcttgtctaattactctttgtagaatggcatctgtggcagagtcaatggaggcagtagcttcatccagaactagaatcctgttcctcttaagtagaact |
320 |
Q |
| |
|
|||||||| |||| |||||||||||||||||||||||| || |||||||| ||||||||||| |||| ||| ||||| |||||||||||||||||||| |
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|
| T |
14946302 |
ctcttgtctgattattctttgtagaatggcatctgtggctgaatcaatggatgcagtagcttcgtccaaaacaagaattttgttcctcttaagtagaact |
14946401 |
T |
|
| Q |
321 |
cttccaagacaaaacaattgcctttgtcccaagctccaatttccaccttcatc |
373 |
Q |
| |
|
||||| || ||||||||||| | |||||||||||||||||||||||||||||| |
|
|
| T |
14946402 |
cttccgaggcaaaacaattggcgttgtcccaagctccaatttccaccttcatc |
14946454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 150 - 372
Target Start/End: Original strand, 5347915 - 5348137
Alignment:
| Q |
150 |
accatgaccatgtcactatctattacagttggaattctgtgagcaacggttataaccgtgcattctgcaaattcttgtctaattactctttgtagaatgg |
249 |
Q |
| |
|
||||||||||| ||||| || || |||||||||| ||| ||||| || |||||||| |||||||||||||||||||||||||||| | |||||||||| | |
|
|
| T |
5347915 |
accatgaccatatcactgtcaataacagttggaactctatgagctacagttataactgtgcattctgcaaattcttgtctaattattttttgtagaatag |
5348014 |
T |
|
| Q |
250 |
catctgtggcagagtcaatggaggcagtagcttcatccagaactagaatcctgttcctcttaagtagaactcttccaagacaaaacaattgcctttgtcc |
349 |
Q |
| |
|
||||||||||||| ||||| ||||||||||||||||||| ||||||||| | || || ||||| || ||||||||||| ||||||||||| ||||| || |
|
|
| T |
5348015 |
catctgtggcagaatcaatagaggcagtagcttcatccaaaactagaattttatttcttttaagaaggactcttccaaggcaaaacaattgtctttggcc |
5348114 |
T |
|
| Q |
350 |
caagctccaatttccaccttcat |
372 |
Q |
| |
|
|| |||||||||| | ||||||| |
|
|
| T |
5348115 |
catgctccaattttccccttcat |
5348137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 66
Target Start/End: Original strand, 5286850 - 5286903
Alignment:
| Q |
11 |
tcatcatattccaccagtttccctttaattatgaccagccaaaaattatgaggcaa |
66 |
Q |
| |
|
|||||||||||||| |||||||||||||| | |||||| |||||||||||||||| |
|
|
| T |
5286850 |
tcatcatattccacaagtttccctttaataa--accagcaaaaaattatgaggcaa |
5286903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 39
Target Start/End: Original strand, 14946118 - 14946146
Alignment:
| Q |
11 |
tcatcatattccaccagtttccctttaat |
39 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
14946118 |
tcatcatattccaccagtttccctttaat |
14946146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 160; Significance: 4e-85; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 118 - 373
Target Start/End: Original strand, 31523367 - 31523622
Alignment:
| Q |
118 |
aagaataaggattaagcataccataaattaagaccatgaccatgtcactatctattacagttggaattctgtgagcaacggttataaccgtgcattctgc |
217 |
Q |
| |
|
||||||||||| | | |||||||||| || || ||||||||||||||| |||||||||||||||||||||||||||| |||||| || ||||||||||| |
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|
| T |
31523367 |
aagaataaggaatcaacataccataagataggatcatgaccatgtcactgtctattacagttggaattctgtgagcaatggttattacagtgcattctgc |
31523466 |
T |
|
| Q |
218 |
aaattcttgtctaattactctttgtagaatggcatctgtggcagagtcaatggaggcagtagcttcatccagaactagaatcctgttcctcttaagtaga |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||| |||||||||| ||||| |
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|
| T |
31523467 |
aaattcttgtctaattactctttgtagaatggcatctgtggcagagtcaatggaggctgtagcttcatctagaactaaaattttgttcctcttgagtagt |
31523566 |
T |
|
| Q |
318 |
actcttccaagacaaaacaattgcctttgtcccaagctccaatttccaccttcatc |
373 |
Q |
| |
|
||||||||||||||||||| ||| | || || ||||||||||||||||||||||| |
|
|
| T |
31523567 |
actcttccaagacaaaacagttggcgctgccctaagctccaatttccaccttcatc |
31523622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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