View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19555_low_34 (Length: 376)
Name: NF19555_low_34
Description: NF19555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19555_low_34 |
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Alignment Details
Target: chr7 (Bit Score: 331; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 12 - 358
Target Start/End: Complemental strand, 46019209 - 46018863
Alignment:
| Q |
12 |
tgagatgaatacgtagagatggaacacttgacaagcagttggcctcggatggaatacacactattaaggactttttgcagctgttgataactaatgaaga |
111 |
Q |
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| T |
46019209 |
tgagaggaatacgtagagatggaacacttgacaagcagttggccttggatggaatacacactattaaggattttttgcagctgttgataactaatgaaga |
46019110 |
T |
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| Q |
112 |
ttcattaagaaatgtaagaaaatatactgttgtttgaaatgttattgtgttcagtaatgattctctactttgatcttgaagttattaatttggttgtttg |
211 |
Q |
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| T |
46019109 |
ttcattaagaaatgtaagaaaatatactgttgtttgaaatattattgtgttcagtaatgattctctactttgatcttgaagttattaatttggttgtttg |
46019010 |
T |
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| Q |
212 |
atactatttcatatgatttttggctttgggaaaatagaaaatagacaagactggtgggaagttatggaagaaaattattgcacatgctaaacattgtgat |
311 |
Q |
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| T |
46019009 |
atactatttcatatgatttttggctttgggaaaatagaaaatagacaagactggtgggaagttatggaagaaaattattgcacatgctaaacattgtgat |
46018910 |
T |
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| Q |
312 |
gtagatgatgatgggtgctacatctattatgtaacagaacaaccaat |
358 |
Q |
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| T |
46018909 |
gtagatgatgatgggtgctacatctattatgtaacagaacaaccaat |
46018863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 36 - 156
Target Start/End: Complemental strand, 46031821 - 46031701
Alignment:
| Q |
36 |
cacttgacaagcagttggcctcggatggaatacacactattaaggactttttgcagctgttgataactaatgaagattcattaagaaatgtaagaaaata |
135 |
Q |
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| T |
46031821 |
cacttgacaagctgttggcatcagatggaatacacactgttaaggattttttgagattgtacataaccaatgaagcttcattaagagaggtaagaaaata |
46031722 |
T |
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| Q |
136 |
tactgttgtttgaaatgttat |
156 |
Q |
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| T |
46031721 |
tactattgtttgaaatattat |
46031701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 228 - 358
Target Start/End: Complemental strand, 46031637 - 46031504
Alignment:
| Q |
228 |
tttttggctttgggaaaatagaaaatagacaagactggtgggaagttatggaagaaaattattgcacatgctaaacattgtgatgtag---atgatgatg |
324 |
Q |
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|||||||||||||||||||||||||||| ||||| || |||| | |||||| | |||| |||||||||||||| |||||||||||| ||||||||| |
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| T |
46031637 |
tttttggctttgggaaaatagaaaataggcaagattgcaaggaattcatggaatacaattgttgcacatgctaaagattgtgatgtagacaatgatgatg |
46031538 |
T |
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| Q |
325 |
ggtgctacatctattatgtaacagaacaaccaat |
358 |
Q |
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| T |
46031537 |
agcgctacatctattactcaactgaacaaccaat |
46031504 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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