View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19555_low_38 (Length: 341)
Name: NF19555_low_38
Description: NF19555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19555_low_38 |
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Alignment Details
Target: chr3 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 12 - 327
Target Start/End: Complemental strand, 36745101 - 36744790
Alignment:
| Q |
12 |
atgaatgcgtcatggtaatccaaaatgaatagcctctcgtcttgaattgcctgttccacaagtaaatgaatacaaattcaatcaacatcaagaggataaa |
111 |
Q |
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| T |
36745101 |
atgaatgcgtcatggtaatccaaaatgaatagcctctcgtcttgaattgcctgttccacaagtaaatgaatacaaattcaatcaacatcaagaggataaa |
36745002 |
T |
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| Q |
112 |
tcaatgaagacatatataatgtcttgtgtgattttctttgaaacaatacacatatatttaccttttctactgtgagtccatccgtgttaatctccaagtg |
211 |
Q |
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| T |
36745001 |
tcaatgaagacatatataatgtcttgtgtgattttctttgaaacaatacacatatatttaccttttctactgtgagtccatccgtgttaatctccaagtg |
36744902 |
T |
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| Q |
212 |
ttcttttgttattgtactagtttgatctccatagacattgggatctagcttgctttcgggtggaaacacctatcattcattcattaatcaatgaaaataa |
311 |
Q |
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| T |
36744901 |
ttcttttgttattgtactagtttgatctccatagacattgggatctagcttgctttcgggtggaaacacctatcatt----cattaatcaatgaaaataa |
36744806 |
T |
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| Q |
312 |
ttacatatgaggaaga |
327 |
Q |
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| T |
36744805 |
tgtcatatgaggaaga |
36744790 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 207 - 278
Target Start/End: Original strand, 6457367 - 6457438
Alignment:
| Q |
207 |
aagtgttcttttgttattgtactagtttgatctccatagacattgggatctagcttgctttcgggtggaaac |
278 |
Q |
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| T |
6457367 |
aagtgttcttttgttattgtactgttttgatcaccatagacagtggtatctagtgtgctttttggtggaaac |
6457438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 202 - 259
Target Start/End: Original strand, 6451177 - 6451234
Alignment:
| Q |
202 |
tctccaagtgttcttttgttattgtactagtttgatctccatagacattgggatctag |
259 |
Q |
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| T |
6451177 |
tctctaagtgttcttttgttattgtgctattttgatcaccatagacagtggcatctag |
6451234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 267
Target Start/End: Complemental strand, 36924904 - 36924846
Alignment:
| Q |
209 |
gtgttcttttgttattgtactagtttgatctccatagacattgggatctagcttgcttt |
267 |
Q |
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| T |
36924904 |
gtgttctttagttattttactggattgatcaccatagactttgtgatctagcttgcttt |
36924846 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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